PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01255.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 229aa    MW: 23933.9 Da    PI: 9.0987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01255.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-202980156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Zmw_sc01255.1.g00060.1.sm.mk 29 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 80
                                  68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-142979IPR001471AP2/ERF domain
CDDcd000187.44E-192988No hitNo description
SMARTSM003808.7E-383093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-323087IPR001471AP2/ERF domain
PROSITE profilePS5103224.4083087IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-223088IPR016177DNA-binding domain
PRINTSPR003673.6E-113142IPR001471AP2/ERF domain
PRINTSPR003673.6E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MALKTAEKTP VSQATGLGLG VGGGVGMGPH YRGVRKRPWG RFAAEIRDPA KKSRVWLGTY  60
DTAEEAARAY DAAAREFRGA KAKTNFPYGS SQCPAPAGAG SPSSNCTVDS SGRGCGAQAP  120
MQAMPLPPSL DHDLFHRTAA GIRFPFKGFP VALPAPNPYF FYEQAAAAAA AVSGYRMLKV  180
APPVTVAAVA QSDSDSSSVV DHTPSPPAAT TKKEAAFDLD LNWPPPEEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-222887363ATERF1
3gcc_A2e-222887363ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970251.12e-96ethylene-responsive transcription factor 4
TrEMBLK3XLF65e-95K3XLF6_SETIT; Uncharacterized protein
STRINGSi002729m9e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174