PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01257.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 342aa MW: 36221.7 Da PI: 9.7675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01257.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.2e-10	277	316	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR ri +++ +L+el+P+ k + a++L +Av+YIk+Lq Zmw_sc01257.1.g00040.1.am.mk 277 RRTRISERIRKLQELVPSM----EKQTNTADMLDLAVDYIKDLQ 316 9***************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.836	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-8	267	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-13	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-8	277	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-14	278	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.69E-8	281	320	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MYGSTVSKDL NLPAVQPQPA TGARTPPPQM SSSGLLRYRS APSNLLGEVC VEDFDAAEGG 60 AAGHPRPDHA ADAALARLLR QSSSPAGFLN HLHMGNGYGN MLRAGGFRNG GDARVKGQLS 120 YSSRQGSVMS QISEMGSEEL GGSSPEAGSN GATAARSYSG IAATGYNAMD ATDQSHLSGA 180 KRPRGPASDP AHALPAQNGH HLVPQLSLPS GGGGGNGKTS ADMAAIEKFL QFQDAVPCKI 240 RAKRGCATHP RSIAERVPPP FLPPLPRSRD RVVNVVRRTR ISERIRKLQE LVPSMEKQTN 300 TADMLDLAVD YIKDLQKQVK ELNDSRANCT CSASKRQNQF TC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MYGSTVSKDL NLPAVQPQPA TGARTPPPQM SSSGLLRYRS APSNLLGEVC VEDFDAAEGG  60
AAGHPRPDHA ADAALARLLR QSSSPAGFLN HLHMGNGYGN MLRAGGFRNG GDARVKGQLS  120
YSSRQGSVMS QISEMGSEEL GGSSPEAGSN GATAARSYSG IAATGYNAMD ATDQSHLSGA  180
KRPRGPASDP AHALPAQNGH HLVPQLSLPS GGGGGNGKTS ADMAAIEKFL QFQDAVPCKI  240
RAKRGCATHP RSIAERVPPP FLPPLPRSRD RVVNVVRRTR ISERIRKLQE LVPSMEKQTN  300
TADMLDLAVD YIKDLQKQVK ELNDSRANCT CSASKRQNQF TC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803424.1	1e-105	transcription factor bHLH130-like
Refseq	XP_025803426.1	1e-105	transcription factor bHLH130-like
TrEMBL	A0A0A9VBR8	1e-108	A0A0A9VBR8_ARUDO; Uncharacterized protein
STRING	Pavir.J14004.1.p	1e-97	(Panicum virgatum)
STRING	TRIUR3_26625-P1	6e-99	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103