PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01257.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1228aa MW: 130985 Da PI: 9.8616

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01257.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3.2e-10	85	135	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 W t E++ll++av+++G+ +W+++a +++ g+t+ +c++r++ Zmw_sc01257.1.g00140.1.am.mk 85 WGTLEELLLACAVTRHGTSSWDSVAMEVQtrsplaarPGLTPHSCRLRFRY 135 9999********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-4	80	137	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-5	81	139	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-5	82	139	IPR009057	Homeodomain-like
CDD	cd00167	3.64E-5	85	136	No hit	No description
PROSITE profile	PS50090	6.237	85	137	IPR017877	Myb-like domain
Pfam	PF00249	8.6E-9	85	135	IPR001005	SANT/Myb domain
SuperFamily	SSF47370	4.97E-7	301	416	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	6.3E-6	338	430	IPR001487	Bromodomain
Pfam	PF00439	1.9E-4	338	401	IPR001487	Bromodomain
CDD	cd04369	2.57E-6	340	411	No hit	No description
Gene3D	G3DSA:3.80.10.10	2.9E-48	724	999	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	6.24E-41	726	1003	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF00560	0.73	844	864	IPR001611	Leucine-rich repeat
Pfam	PF13516	0.43	936	950	IPR001611	Leucine-rich repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1228 aa Download sequence Send to blast
MGMTGDIAPD SSETTPAKHE NSRVLETGTR EKIDGGKQRR GKGFIQEENL ALQLQEQARG 60 MGDGSDGTDM SPESEAAAEK GGEIWGTLEE LLLACAVTRH GTSSWDSVAM EVQTRSPLAA 120 RPGLTPHSCR LRFRYLHRRF SNVGAAGEEE VGDGNGDDPD ASAAEGWVDE LRRLRVAELR 180 RDVERCDLSI GTLQSKVKRL REERARSLSG AAKPDAASGN DRLSGEEPGR SCRESNSSDL 240 KPPKHPGAVK EEEVAKQEAS GESAAASKES SEVRSTASLC RRRRSSGKTS GNEEEEAAST 300 PRPLPAQSTP PSALLDAVAA KLGPVMERLR EHESEEGAAY RGMIRRHVDL ETVRTKLEAT 360 TASRADDDDC YPASEFYRDL LLLCTNAVVF FPRSEPEHAA AVEARGLVSE HASTVLREPK 420 QEHVATAVPV PAPGPAPAGG DIVGPLIEKV KPLIFCRKRS SIAKAAAMKK EIAEKAEPEE 480 HAESEEEKEA VAAGPREKAW GLRTKKRGGA VRRLAGTRLT DDAATTDGAK KGAPGAGAAA 540 GGLAKKRNAV DFLKRLNQGS SPTKKRGSPL GTTRRRSASR AATEEQPKTR RRGTGRMDGT 600 GRGGGTKRGG KAGAAKRGVG RPLKRGAAPS TPPPSKRAKT SRSDKPATGK RRGRSDVAVA 660 SGAMCVRVYQ HRISTMIAKA KAKANAMSSR SSKPLSCSLL PLLLLCTVNT APSSATDCDP 720 NDRAALLRPS TNCCAWEPAV FCNAAGRVTG LALYALDELR APVPPALGEL TELEILQVDS 780 VPGLSGPIPA SFGNLTRLRD LDINGTSISG PVPGFLSCSN LSTLVIANSK LAGPIPPSLA 840 ALPSLRYLDL SGNMLTGAIP PGLLHGSSRF LILSNNRLTG EIPPDDYSNV DTVDLSRNQL 900 TGDPSPFLFG ITKPAVKIDL SWNELRFDMT EVSFPHHLRF LDLSHNRIAG SVAKSLLDVK 960 LEHFDVSYND LCGEVPAGRF MAVHGPDCYA QNRCLCGTPL PPCDTGIRHE AATRFTLLWI 1020 AALVTRVYQC RPFPSSAMQP LVATDESLPG AHASARVVPP STAPTRTCAL AAWQPPPPPT 1080 PPPRPWRAWG RTTATSGGKP SEITSAPACL GTRLPAGNGA CPTRRGKRMG RSAGGVRRTP 1140 AGRPQPPAVF LSFPCAGRER RTRAPPAPSV PRLVHQTSPP FFAGSWLVRF ECGHGLVDQD 1200 VGVIRVLNQF PRDLPPKTVS RMTRPKTM

Sequence ? help Back to Top

Protein Sequence Length: 1228 aa Download sequence Send to blast

MGMTGDIAPD SSETTPAKHE NSRVLETGTR EKIDGGKQRR GKGFIQEENL ALQLQEQARG  60
MGDGSDGTDM SPESEAAAEK GGEIWGTLEE LLLACAVTRH GTSSWDSVAM EVQTRSPLAA  120
RPGLTPHSCR LRFRYLHRRF SNVGAAGEEE VGDGNGDDPD ASAAEGWVDE LRRLRVAELR  180
RDVERCDLSI GTLQSKVKRL REERARSLSG AAKPDAASGN DRLSGEEPGR SCRESNSSDL  240
KPPKHPGAVK EEEVAKQEAS GESAAASKES SEVRSTASLC RRRRSSGKTS GNEEEEAAST  300
PRPLPAQSTP PSALLDAVAA KLGPVMERLR EHESEEGAAY RGMIRRHVDL ETVRTKLEAT  360
TASRADDDDC YPASEFYRDL LLLCTNAVVF FPRSEPEHAA AVEARGLVSE HASTVLREPK  420
QEHVATAVPV PAPGPAPAGG DIVGPLIEKV KPLIFCRKRS SIAKAAAMKK EIAEKAEPEE  480
HAESEEEKEA VAAGPREKAW GLRTKKRGGA VRRLAGTRLT DDAATTDGAK KGAPGAGAAA  540
GGLAKKRNAV DFLKRLNQGS SPTKKRGSPL GTTRRRSASR AATEEQPKTR RRGTGRMDGT  600
GRGGGTKRGG KAGAAKRGVG RPLKRGAAPS TPPPSKRAKT SRSDKPATGK RRGRSDVAVA  660
SGAMCVRVYQ HRISTMIAKA KAKANAMSSR SSKPLSCSLL PLLLLCTVNT APSSATDCDP  720
NDRAALLRPS TNCCAWEPAV FCNAAGRVTG LALYALDELR APVPPALGEL TELEILQVDS  780
VPGLSGPIPA SFGNLTRLRD LDINGTSISG PVPGFLSCSN LSTLVIANSK LAGPIPPSLA  840
ALPSLRYLDL SGNMLTGAIP PGLLHGSSRF LILSNNRLTG EIPPDDYSNV DTVDLSRNQL  900
TGDPSPFLFG ITKPAVKIDL SWNELRFDMT EVSFPHHLRF LDLSHNRIAG SVAKSLLDVK  960
LEHFDVSYND LCGEVPAGRF MAVHGPDCYA QNRCLCGTPL PPCDTGIRHE AATRFTLLWI  1020
AALVTRVYQC RPFPSSAMQP LVATDESLPG AHASARVVPP STAPTRTCAL AAWQPPPPPT  1080
PPPRPWRAWG RTTATSGGKP SEITSAPACL GTRLPAGNGA CPTRRGKRMG RSAGGVRRTP  1140
AGRPQPPAVF LSFPCAGRER RTRAPPAPSV PRLVHQTSPP FFAGSWLVRF ECGHGLVDQD  1200
VGVIRVLNQF PRDLPPKTVS RMTRPKTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ogq_A	2e-53	718	1003	3	312	POLYGALACTURONASE INHIBITING PROTEIN