PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01269.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 1515aa MW: 163826 Da PI: 10.3666

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01269.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.7	1.9e-08	1263	1300	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Zmw_sc01269.1.g00140.1.am.mk 1263 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 1300 564459******************************88 PP
2	BELL	68.9	9.6e-23	1141	1195	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Vd+rY+ y+eq++ +++ Feavag +a+ Yt+lA+++iSrhFr+L+d i+ q+ Zmw_sc01269.1.g00140.1.am.mk 1141 HVDRRYRSYCEQMRSLAGGFEAVAGERAAAAYTALASRTISRHFRNLRDGIVAQL 1195 79**************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.4E-4	920	1049	IPR006563	POX domain
Pfam	PF07526	2.9E-15	926	1014	IPR006563	POX domain
SMART	SM00574	1.4E-6	1071	1193	IPR006563	POX domain
Pfam	PF07526	1.7E-19	1139	1191	IPR006563	POX domain
PROSITE profile	PS50071	12.05	1241	1304	IPR001356	Homeobox domain
CDD	cd00086	1.74E-11	1244	1305	No hit	No description
SMART	SM00389	6.6E-9	1244	1308	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	1245	1311	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-27	1247	1310	IPR009057	Homeodomain-like
Pfam	PF05920	2.3E-17	1261	1300	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1515 aa Download sequence Send to blast
MHVCGWAGPN GLLQQIGPKR MMPRLAVPRR RGSSRDRSFS SVLRAAPCGS FSRCYGLRQI 60 SLSIHKRSAG RTDESSTRHV FTVHRIQHGP WKWQEATERG EARRPVTVAA RMPRPAAPHG 120 GPAGILPQHK YENHDYGGRG RCEEGRSFSA QPLTLRRRGH QRQAPPARLR ERWRSGVAVG 180 SHRRRPRPNS TLTSPAPTES TLPPKPAAAT TPNQPALLIR SIAACCDRLP TGILFDSDRP 240 PQGTMEKKLP LALPLVHHER LWARPWRWAK TAFFIAAMLA SLLLVCAPPP LVVLLDLLLP 300 PALLHSFLRA QPQSQQLPAS VSFASSLLDQ ARAFRFGSSL VDLPAVSAAR SLLILCAYTA 360 CGGGAAYMWV AVACSVGSGC YVVAKAVGVF CGAGAGLQLQ GKGQVVAVEA MFLVSLALAA 420 AHLAMAYRAS CRERRRLLVY RIDVEAWLVL DIPPVGSLSS ARNVTKCRAR ARAAQQPPLR 480 ATSSPSCGLA QASWMPVACD PSIPSRGARM LGRSAGCRQP KHTHTHTVRA SRRRLASIVC 540 ASLADGWMAT PYRTDAKAGR VVVVDSSSSE DLLLLLYRST TSLVVTDKKK GRHVQTNGTC 600 MVENMSTPGH QLVGTTQPRT IKRSEVCELG RSRRSAHSGD DLRAGAAFNQ IRADISAETA 660 ASAPVKRATP SRLPVAVSGP ASIDRSNGAR CRTAPGDRRG RRDRQDNDGV VVVVVVVVFS 720 DPSLLGAREP LATRPPLPLR RRRRLCMRRC VMRDASVTSF RDEAAAAAAA GRGESLTRQP 780 PPRSIHREQQ LPSVPCFADY FSVATADATA GMPAMEEGAP ELFGYHADME LLGMRGLAAA 840 MPGGDSKAAV LIDAGSGGDH GQQQHHQLPT QAPLSLSLCR PDGGAVQGMT LHQHLAGSSR 900 LQHQQQPAAW STHDHSAGLV GSSWHLRSSR FLLPTQQLLQ EFCSLPGAAD ITNKRAKAAT 960 TTTKPSHEQQ NEADGGDGSS SSASWAPSPQ IQAMDAVELQ RLKDKLYIML EEVSDDRSVM 1020 AARQGRLPVP GPHPPLLETS IPLPLFRSSY PCHLFSTRGR PAIPVTPWPG QSLCSLHKNS 1080 AMTLRAQAAF LFCSCMLLLH CLASDSLCRP IPCHSIQCRR LTQRKFYCAV PAQLHQAELM 1140 HVDRRYRSYC EQMRSLAGGF EAVAGERAAA AYTALASRTI SRHFRNLRDG IVAQLQAVRK 1200 ALGEKGVAVP GMTRGETPRL RVLDQCIRQQ KTLSQAGMME SHPWRPQRGL PERAVTILRA 1260 WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKGEQLH 1320 DGSGEGHVNP NPTSSQGAAS AEAYNGGRHG GVGEADAGGA GNNCVDRKPT RDQLMHDAGS 1380 LASVVNVGSS RGARLENFGL MDHHLHFDAP YDGGHHQAAS FGGVSLTLGL QQHADSRVDS 1440 GVNIAFGAPP PSAHHGGAAA GYLFATGHQQ QQQQTEVGHH VQFGGAGMDG DAVAHGQEHY 1500 RSLSAGFHLL RDLAG

Sequence ? help Back to Top

Protein Sequence Length: 1515 aa Download sequence Send to blast

MHVCGWAGPN GLLQQIGPKR MMPRLAVPRR RGSSRDRSFS SVLRAAPCGS FSRCYGLRQI  60
SLSIHKRSAG RTDESSTRHV FTVHRIQHGP WKWQEATERG EARRPVTVAA RMPRPAAPHG  120
GPAGILPQHK YENHDYGGRG RCEEGRSFSA QPLTLRRRGH QRQAPPARLR ERWRSGVAVG  180
SHRRRPRPNS TLTSPAPTES TLPPKPAAAT TPNQPALLIR SIAACCDRLP TGILFDSDRP  240
PQGTMEKKLP LALPLVHHER LWARPWRWAK TAFFIAAMLA SLLLVCAPPP LVVLLDLLLP  300
PALLHSFLRA QPQSQQLPAS VSFASSLLDQ ARAFRFGSSL VDLPAVSAAR SLLILCAYTA  360
CGGGAAYMWV AVACSVGSGC YVVAKAVGVF CGAGAGLQLQ GKGQVVAVEA MFLVSLALAA  420
AHLAMAYRAS CRERRRLLVY RIDVEAWLVL DIPPVGSLSS ARNVTKCRAR ARAAQQPPLR  480
ATSSPSCGLA QASWMPVACD PSIPSRGARM LGRSAGCRQP KHTHTHTVRA SRRRLASIVC  540
ASLADGWMAT PYRTDAKAGR VVVVDSSSSE DLLLLLYRST TSLVVTDKKK GRHVQTNGTC  600
MVENMSTPGH QLVGTTQPRT IKRSEVCELG RSRRSAHSGD DLRAGAAFNQ IRADISAETA  660
ASAPVKRATP SRLPVAVSGP ASIDRSNGAR CRTAPGDRRG RRDRQDNDGV VVVVVVVVFS  720
DPSLLGAREP LATRPPLPLR RRRRLCMRRC VMRDASVTSF RDEAAAAAAA GRGESLTRQP  780
PPRSIHREQQ LPSVPCFADY FSVATADATA GMPAMEEGAP ELFGYHADME LLGMRGLAAA  840
MPGGDSKAAV LIDAGSGGDH GQQQHHQLPT QAPLSLSLCR PDGGAVQGMT LHQHLAGSSR  900
LQHQQQPAAW STHDHSAGLV GSSWHLRSSR FLLPTQQLLQ EFCSLPGAAD ITNKRAKAAT  960
TTTKPSHEQQ NEADGGDGSS SSASWAPSPQ IQAMDAVELQ RLKDKLYIML EEVSDDRSVM  1020
AARQGRLPVP GPHPPLLETS IPLPLFRSSY PCHLFSTRGR PAIPVTPWPG QSLCSLHKNS  1080
AMTLRAQAAF LFCSCMLLLH CLASDSLCRP IPCHSIQCRR LTQRKFYCAV PAQLHQAELM  1140
HVDRRYRSYC EQMRSLAGGF EAVAGERAAA AYTALASRTI SRHFRNLRDG IVAQLQAVRK  1200
ALGEKGVAVP GMTRGETPRL RVLDQCIRQQ KTLSQAGMME SHPWRPQRGL PERAVTILRA  1260
WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKGEQLH  1320
DGSGEGHVNP NPTSSQGAAS AEAYNGGRHG GVGEADAGGA GNNCVDRKPT RDQLMHDAGS  1380
LASVVNVGSS RGARLENFGL MDHHLHFDAP YDGGHHQAAS FGGVSLTLGL QQHADSRVDS  1440
GVNIAFGAPP PSAHHGGAAA GYLFATGHQQ QQQQTEVGHH VQFGGAGMDG DAVAHGQEHY  1500
RSLSAGFHLL RDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	4e-16	1250	1308	5	63	Homeobox protein Meis2
4xrm_B	4e-16	1250	1308	5	63	Homeobox protein Meis2
5bng_A	4e-16	1250	1308	1	59	Homeobox protein Meis2
5bng_B	4e-16	1250	1308	1	59	Homeobox protein Meis2

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	738	744	LRRRRRL