PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01281.1.g00240.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 412aa MW: 45149.4 Da PI: 6.9911

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01281.1.g00240.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.9e-54	17	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdee+v++yL +k+ + +++ vi++vd++k+ePw+Lp k+k +ekewyfF+++d+ky+tg+r+nrat+sg Zmw_sc01281.1.g00240.1.am.mk 17 LPPGFRFHPTDEEVVSHYLIPKALSCLFTC-LVIADVDLNKCEPWELPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATASG 96 79**********************9999.78***********99999************************ PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkdke+++ +g lvg+kktLvfy grap+g+kt Wvmheyr+ Zmw_sc01281.1.g00240.1.am.mk 97 YWKATGKDKEIFRGRGVLVGMKKTLVFYLGRAPHGKKTPWVMHEYRI 143 *******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-60	6	153	IPR003441	NAC domain
PROSITE profile	PS51005	54.453	17	203	IPR003441	NAC domain
Pfam	PF02365	6.3E-28	18	143	IPR003441	NAC domain
SuperFamily	SSF101941	1.02E-60	191	203	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MSEVSEMHNQ GEEQLELPPG FRFHPTDEEV VSHYLIPKAL SCLFTCLVIA DVDLNKCEPW 60 ELPGKAKMGE KEWYFFCHKD RKYPTGTRTN RATASGYWKA TGKDKEIFRG RGVLVGMKKT 120 LVFYLGRAPH GKKTPWVMHE YRIEGRLPPN LPRAAKGRMS CRPPSCRRAW TTRGRKRALT 180 SSLVFFSTCC VQDEWAVCRV FNKEYLAAKP GLQQTASTSS PAAAGTMQRS DSLAFLDDLL 240 DPADLPPLTD SPFADDFKGA AVPGSMSNMI SGCQQVKTEQ PAPAQNPPPP PALMQDTAYS 300 YFSLPATNNN TGGYSHHPQA AGADHLSAIR RHCTATAPAL ASPDIARTPL YPELESLDDL 360 GGLMDYSNMW NVGEIGSGSP GDEAMDRVCW CAGTASVDPV VVGVCCLQII LE

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MSEVSEMHNQ GEEQLELPPG FRFHPTDEEV VSHYLIPKAL SCLFTCLVIA DVDLNKCEPW  60
ELPGKAKMGE KEWYFFCHKD RKYPTGTRTN RATASGYWKA TGKDKEIFRG RGVLVGMKKT  120
LVFYLGRAPH GKKTPWVMHE YRIEGRLPPN LPRAAKGRMS CRPPSCRRAW TTRGRKRALT  180
SSLVFFSTCC VQDEWAVCRV FNKEYLAAKP GLQQTASTSS PAAAGTMQRS DSLAFLDDLL  240
DPADLPPLTD SPFADDFKGA AVPGSMSNMI SGCQQVKTEQ PAPAQNPPPP PALMQDTAYS  300
YFSLPATNNN TGGYSHHPQA AGADHLSAIR RHCTATAPAL ASPDIARTPL YPELESLDDL  360
GGLMDYSNMW NVGEIGSGSP GDEAMDRVCW CAGTASVDPV VVGVCCLQII LE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-50	14	143	17	145	NAC domain-containing protein 19
3swm_B	6e-50	14	143	17	145	NAC domain-containing protein 19
3swm_C	6e-50	14	143	17	145	NAC domain-containing protein 19
3swm_D	6e-50	14	143	17	145	NAC domain-containing protein 19
3swp_A	6e-50	14	143	17	145	NAC domain-containing protein 19
3swp_B	6e-50	14	143	17	145	NAC domain-containing protein 19
3swp_C	6e-50	14	143	17	145	NAC domain-containing protein 19
3swp_D	6e-50	14	143	17	145	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461233.1	1e-113	NAC domain-containing protein 79
Swissprot	Q9FK44	4e-80	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0A9IAM4	1e-127	A0A0A9IAM4_ARUDO; Uncharacterized protein
STRING	Sb02g043270.1	1e-112	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]