PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01288.1.g00220.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 562aa    MW: 60020.2 Da    PI: 8.2096
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01288.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19104154155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++ a+ +++g
  Zmw_sc01288.1.g00220.1.am.mk 104 SRYRGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEEAARAYDVAAVEFRG 154
                                   79********.**********7.....338***********************9998 PP
2AP263.64.3e-20431481155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a++ a+ +l+g
  Zmw_sc01288.1.g00220.1.am.mk 431 SQFRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDVAAVELRG 481
                                   789*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-13104154IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23104163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-31105163IPR001471AP2/ERF domain
SMARTSM003802.5E-35105168IPR001471AP2/ERF domain
PROSITE profilePS5103225.818105162IPR001471AP2/ERF domain
PRINTSPR003676.2E-11106117IPR001471AP2/ERF domain
CDDcd000183.83E-26109164No hitNo description
PRINTSPR003676.2E-11128144IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22431490IPR016177DNA-binding domain
PfamPF008477.7E-13432481IPR001471AP2/ERF domain
PROSITE profilePS5103225.198432489IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-30432490IPR001471AP2/ERF domain
SMARTSM003801.3E-34432495IPR001471AP2/ERF domain
CDDcd000181.83E-28432491No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MLPNTEQANS LLLRALISVV SGDAAVPTLD ELAETKPQVA AAPPAACARC GVDGCPGCEL  60
SAGDATATTG SRSDSEDGES MSMSRVVVAG GVGKQGRRRG ARGSRYRGVR RRPWGKWAAE  120
IRDPHRAARK WLGTFDTAEE AARAYDVAAV EFRGQRAKLN FPADAAAVSA YSSWATIQVP  180
QQPVPQSLHE YCGLTAASPV HMAQAPAAQL WQQQGGRPAA KDREEIWDGL DEILMLEDDS  240
FWSIPRGRGP RSTASTDSSG VDKWFGQREV QRDVSMCVVS VPFARGADPS GELAGETQGR  300
ERPQQHPAMA PRLGRGGFRL PNAEQEDSLF LRALTSVVSG DTAVPTLHVL AEPKPQVAAA  360
PALAPAAFCA RCGVHGCRLG CELSAVVDAA ATAGSSGDSE DEEGQSSSRR GVTEGVGKRG  420
RSRRRARARV SQFRGVRRRP WGKWAAEIRD PRRAVRKWLG TFDTAEEAAR AYDVAAVELR  480
GQRAKLNFPA AASVGAATER SAAASASAQQ LPLPILRESI REKCGSNAAS PEPMAPVPKD  540
QEIWDGLNEI IMSDDGSFWQ MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2196498581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418428RGRSRRRARAR
2422438RRRARARVSQFRGVRRR
3423439RRARARVSQFRGVRRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-84ethylene-responsive transcription factor ERF109
TrEMBLQ6Z7P92e-83Q6Z7P9_ORYSJ; AP2 domain-containing transcription factor-like
STRINGOS02T0764700-014e-84(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124