PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01305.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 224aa MW: 26026.7 Da PI: 10.5428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01305.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.2	4e-11	6	88	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++ ++ +GF++rk++s++ g +++ Cs +g+++++ +++r+++++r g ka++ + dg+ + +++l Zmw_sc01305.1.g00130.1.sm.mk 6 NFYKTNSELAGFNIRKNRSRNG---G--RGHDYECSSSGHNSKSPGV--NRKREKTTKRKGWKAMVCAVISFDGTTVYFRIVL 81 6*************987665...3..678*******99877..8999999*******99999******* PP FAR1 84 eHnHela 90 eHnHel+ Zmw_sc01305.1.g00130.1.sm.mk 82 EHNHELT 88 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-7	6	88	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDDAFNFYKT NSELAGFNIR KNRSRNGGRG HDYECSSSGH NSKSPGVNRK REKTTKRKGW 60 KAMVCAVISF DGTTVYFRIV LEHNHELTRT PTMTKQMRTH KFKEGPIDDM ANVMHRAKVK 120 HVNMMNVLRE SVGGSENLSM SERDIQNRRV ALARTEVYAT HQDNAMEKAI SSIFLNTFHR 180 FCRWHMLRKY KDPLSQMYNQ QLKQKDRLTS VINHPLNLAE FEAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J22247.1.p	3e-40	(Panicum virgatum)