PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01319.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 186aa    MW: 20660.8 Da    PI: 5.3046
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01319.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB85.94.7e-2713102695
                         NF-YB   6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                                   r +P++ v+rim+++lP n+ki  d+k+ +++c+sef + +t ea+   ++e r+ ++gdd++ al+ +Gf + v pl+++
  Zmw_sc01319.1.g00160.1.sm.mk  13 RRIPMTTVTRIMHRALPRNSKINTDTKDAMNQCISEFTARLTHEAARVGKEESRRIMSGDDIILALGRMGFSNCVGPLTLF 93 
                                   789****************************************************************************** PP

                         NF-YB  87 lkkyreleg 95 
                                   l++y e eg
  Zmw_sc01319.1.g00160.1.sm.mk  94 LRRYHESEG 102
                                   *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-2410104IPR009072Histone-fold
SuperFamilySSF471133.55E-2013111IPR009072Histone-fold
PfamPF008089.5E-151478IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAAGMEAPPE DFRRIPMTTV TRIMHRALPR NSKINTDTKD AMNQCISEFT ARLTHEAARV  60
GKEESRRIMS GDDIILALGR MGFSNCVGPL TLFLRRYHES EGIMPRGWQD ELASQELMSS  120
SQVVVEQQLP AAMPTVSVEL QPPELNLTLG LALPVPRDVT ELGLHEDVYK VWPRPAGPMP  180
LADGNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-201399692Transcription factor HapC (Eurofung)
4g92_B4e-201399692Transcription factor HapC (Eurofung)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326