PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01325.1.g00260.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 243aa    MW: 27373.3 Da    PI: 10.3036
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01325.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.25.8e-381342331100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC++ Cv+apyfp ++++kfa vh++FGasn +k+l+++p+  r da++sl+yeA+ar+rdPvyG+v+ il
  Zmw_sc01325.1.g00260.1.am.mk 134 PCAACKLLRRKCTQVCVFAPYFPPDNAAKFASVHEVFGASNASKILNDVPQALRGDAANSLAYEADARIRDPVYGCVAYIL 214
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    lq ++++ +ae++++ +e
  Zmw_sc01325.1.g00260.1.am.mk 215 ILQCKVKEISAEIDAASKE 233
                                   *************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.387133234IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-38134230IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLLRWRCWDE HHNEQRQRWV WRHVQPSCTR PFSFRQQWRQ LIRGGWSRQA GGDLGLLRSR  60
GDLHPCLTRA SSSCLVILVM NSSSSGRHHE PFGRIPPLFP TNPSRARSGS PRAQPRYAPP  120
PRGDRRSMSS SISPCAACKL LRRKCTQVCV FAPYFPPDNA AKFASVHEVF GASNASKILN  180
DVPQALRGDA ANSLAYEADA RIRDPVYGCV AYILILQCKV KEISAEIDAA SKELYHLASR  240
TSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3913323810115LOB family transfactor Ramosa2.1
5ly0_B2e-3913323810115LOB family transfactor Ramosa2.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2943544