PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01326.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 269aa MW: 29067.8 Da PI: 10.5792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01326.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	102	146	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++P k ++Ka+ L k+v+ +k L Zmw_sc01326.1.g00100.1.am.mk 102 HSEAERRRRERINAHLATLRRMIPDT-----KQMDKATLLAKVVDQVKAL 146 9**********************9.....67*********988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.869	97	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-13	101	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-13	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	102	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	103	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MSFAAARATY YCKQQHEQLS PLLGCFLHLA SSSSSLYPSA PLISCHFLSL VMLFKLGGPV 60 LLRRQTSLAP PVVTVGPPEM SSSSGSGSGK RATEARRALK IHSEAERRRR ERINAHLATL 120 RRMIPDTKQM DKATLLAKVV DQVKALKRKA REAARSVPLP PEFDEVSIEC YTSDAAAGIV 180 GTDKVVYIKA SVSCDNRPDL IPGIIQALRR LRLRALRADM TSLGGRVRLV FTLCKEDGSG 240 AGASLGSLKE AVRQALAKAA SPEMELGKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	110	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623162.1	2e-79	putative transcription factor bHLH107
TrEMBL	A0A0D9Y3K3	2e-83	A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRING	OGLUM01G04250.1	3e-84	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78