PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01327.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26755.8 Da    PI: 10.0058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01327.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.5e-201664149
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  kri+ +  rqv fskRr+g++KKA+ELS+LC+a v  ++fs+ gk +++
  Zmw_sc01327.1.g00040.1.am.mk 16 KRINCTAARQVCFSKRRQGLFKKASELSILCGAMVGFVVFSPAGKPFTF 64
                                  68889999*************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-26881IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.399868IPR002100Transcription factor, MADS-box
CDDcd002651.59E-32976No hitNo description
PRINTSPR004041.1E-181030IPR002100Transcription factor, MADS-box
PfamPF003197.2E-241764IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-183045IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-184566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGKGRASMGR QKIEIKRINC TAARQVCFSK RRQGLFKKAS ELSILCGAMV GFVVFSPAGK  60
PFTFGSPSIK AVIDKHFRTL GNRSSPKVDH EIHNVSGVET TVLLERKELE KSLEAKKIRT  120
KKMDEEIVEK DCGYLMHYTS ADISGLGPYE LQEIYNNLEA IKYVLMGMHS QMHQEKPAVR  180
VDVGDSFASG VKFMDIGAQK SVDEGICSLH QRGQSVLTTS SSRGNNLRVD ADAARRIRPH  240
P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986970.13e-41agamous-like MADS-box protein AGL29
TrEMBLK4AJ951e-42K4AJ95_SETIT; Uncharacterized protein
STRINGSi038960m2e-43(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128