PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01335.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 537aa MW: 58122.4 Da PI: 10.7039

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01335.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.1e-32	236	294	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Zmw_sc01335.1.g00150.1.am.mk 236 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 294 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.6E-33	222	294	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-28	228	295	IPR003657	WRKY domain
PROSITE profile	PS50811	28.564	231	296	IPR003657	WRKY domain
SMART	SM00774	7.7E-39	236	295	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	237	294	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MQWLSCGRWL LPHAALSRGE TRARMLGTFA QRLSPSILFP LTSAYPPVTA TLQLHSHGPT 60 YIYRYQAPDH VIDLAAVAVA RCWLDPAPME DSLRGVHQRN EALPHHQLSA FLVPPPVSAP 120 PQQQEEQPVC NNVVAATAGL APAGVVSCAP LVDWTSLLPP RAPGLLQLPA IAEADRAASG 180 GQKTGGGEGS STVTTASGSS GKEMMVTGGK KGGGRGRKKA SRPRFAFQTR SENDVLDDGY 240 RWRKYGQKAV KNSAFPRSYY RCTHHTCNVK KQVQRLAKDT SIVVTTYEGV HNHPCEKLME 300 ALNPILRQLQ FLSQIAQSVA NQAQKNSNPA PSNEPSDRRR PPHSHVLTTY DRRGSSPSRK 360 VIPLSSPLVS SLSTVSPSIP LLAAGPGTGR SAPAVFLVAS NPAPKVASGL HSTILVVWLP 420 YPSDPASKAL GGRALSRDLT DHVRCARSRG ILPPYRWRLH AEHARPKLAG HPYVRCARSR 480 GTHPPYPSVP AMCAYAVRGD EGIRGARDWI ECGIAKSWRV RLGTRMPTSS AHIGKHK

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MQWLSCGRWL LPHAALSRGE TRARMLGTFA QRLSPSILFP LTSAYPPVTA TLQLHSHGPT  60
YIYRYQAPDH VIDLAAVAVA RCWLDPAPME DSLRGVHQRN EALPHHQLSA FLVPPPVSAP  120
PQQQEEQPVC NNVVAATAGL APAGVVSCAP LVDWTSLLPP RAPGLLQLPA IAEADRAASG  180
GQKTGGGEGS STVTTASGSS GKEMMVTGGK KGGGRGRKKA SRPRFAFQTR SENDVLDDGY  240
RWRKYGQKAV KNSAFPRSYY RCTHHTCNVK KQVQRLAKDT SIVVTTYEGV HNHPCEKLME  300
ALNPILRQLQ FLSQIAQSVA NQAQKNSNPA PSNEPSDRRR PPHSHVLTTY DRRGSSPSRK  360
VIPLSSPLVS SLSTVSPSIP LLAAGPGTGR SAPAVFLVAS NPAPKVASGL HSTILVVWLP  420
YPSDPASKAL GGRALSRDLT DHVRCARSRG ILPPYRWRLH AEHARPKLAG HPYVRCARSR  480
GTHPPYPSVP AMCAYAVRGD EGIRGARDWI ECGIAKSWRV RLGTRMPTSS AHIGKHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-23	226	293	7	74	Probable WRKY transcription factor 4
2lex_A	3e-23	226	293	7	74	Probable WRKY transcription factor 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	213	GGKKGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133