PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01335.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 480aa MW: 53481.3 Da PI: 4.8147

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01335.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.6e-35	36	127	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl k+ye++ed+++++++sw g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k+++e+ weF+ Zmw_sc01335.1.g00320.1.am.mk 36 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFA 107 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F +g+++ll++i+r+k Zmw_sc01335.1.g00320.1.am.mk 108 NEDFIRGHTHLLKNIHRRKP 127 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.13E-36	31	125	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.7E-39	32	125	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.6E-62	32	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-20	36	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-31	36	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-20	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	75	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-20	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000302	Biological Process	response to reactive oxygen species
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MLPGKERESE TEAAGMEGSQ SRSGGGGGGS SSPPPFLIKT YEMVEDPATN HVVSWGPGGA 60 SFVVWNPPDF SQELLPKYFK HNNFSSFIRQ LNTYGFRKID SERWEFANED FIRGHTHLLK 120 NIHRRKPVHS HSVQNQVNTL AESERREYED EINRLKYEKS LLLADLQKQD QQRCLTNWQM 180 QSLEDRLMQM EQRQKNIVAS LCDILQRNGA VSSPLSLQTD HFNFSKKRRV PKIGFFADDD 240 AAVEEERQAS FLQMMGAVPK SPSVFPVQQH PVNAEPFDRM ETSLVSLEKF IQRASDADAS 300 PQDMFAIADA PSLAVALGEV QSAPMETGIN LQSSTGQVHS SAGFAESSCY ASSPMLPLAD 360 LREDAPRTAK VDINSDTTST DTSQDEATTE TGGSLSQEPA KVNDVFWERF LTETPKFGRA 420 GEADSGRQED ECKSEPAEVK EDEKVAVDCG SLHRYKVVDQ ITEQMGQLAS AEYAVPHHLR

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MLPGKERESE TEAAGMEGSQ SRSGGGGGGS SSPPPFLIKT YEMVEDPATN HVVSWGPGGA  60
SFVVWNPPDF SQELLPKYFK HNNFSSFIRQ LNTYGFRKID SERWEFANED FIRGHTHLLK  120
NIHRRKPVHS HSVQNQVNTL AESERREYED EINRLKYEKS LLLADLQKQD QQRCLTNWQM  180
QSLEDRLMQM EQRQKNIVAS LCDILQRNGA VSSPLSLQTD HFNFSKKRRV PKIGFFADDD  240
AAVEEERQAS FLQMMGAVPK SPSVFPVQQH PVNAEPFDRM ETSLVSLEKF IQRASDADAS  300
PQDMFAIADA PSLAVALGEV QSAPMETGIN LQSSTGQVHS SAGFAESSCY ASSPMLPLAD  360
LREDAPRTAK VDINSDTTST DTSQDEATTE TGGSLSQEPA KVNDVFWERF LTETPKFGRA  420
GEADSGRQED ECKSEPAEVK EDEKVAVDCG SLHRYKVVDQ ITEQMGQLAS AEYAVPHHLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-25	24	125	17	129	Heat shock factor protein 1
5d5v_B	8e-25	24	125	17	129	Heat shock factor protein 1
5d5v_D	8e-25	24	125	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00443	DAP	Transfer from AT4G18880	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:12032317}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810280.1	0.0	heat stress transcription factor A-4d-like
Refseq	XP_025810281.1	0.0	heat stress transcription factor A-4d-like
Swissprot	Q93VB5	1e-166	HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBL	A0A2S3HA79	0.0	A0A2S3HA79_9POAL; Uncharacterized protein
STRING	Si022026m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3296	37	78

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Kojo K, et al. Regulatory mechanisms of ROI generation are affected by rice spl mutations. Plant Cell Physiol., 2006. 47(8): p. 1035-44 [PMID:16816407]