PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01338.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 250aa    MW: 29159.6 Da    PI: 9.9877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01338.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.5e-101438226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                  ++++C+f+++ G C++GdrC++ H 
  Zmw_sc01338.1.g00100.1.sm.mk 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                                  6899********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0651240IPR000571Zinc finger, CCCH-type
SMARTSM003560.00681339IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-71438IPR000571Zinc finger, CCCH-type
PRINTSPR018483.2E-401837IPR009145U2 auxiliary factor small subunit
PRINTSPR018483.2E-403757IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3302.9E-1944134IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.89355141IPR000504RNA recognition motif domain
PRINTSPR018483.2E-407590IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549282.17E-1278143IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000761.4E-483133IPR000504RNA recognition motif domain
PRINTSPR018483.2E-40103125IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEHLASIFG REKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLVLVN MYQRPNMITP  60
GVDAQGQLID PRKMQEYFED FYEDIYEELS KFGEIENLNV CDKIADHMIG NVYVQFREED  120
QAAAAHTALQ GRPIVVDFSP VTGFHEATCR QDLRKKLFGR SRRPHRGRSH RPSPHHRWER  180
REDNRGRDDY RGGGGGHKGG GSRHERYDDG GRRRHGGSPP RRARSPVRES SEERRAKIEQ  240
WNREREEKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A1e-4811511151Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458285.11e-135splicing factor U2af small subunit B
RefseqXP_021313023.11e-135splicing factor U2af small subunit B
RefseqXP_021313024.11e-135splicing factor U2af small subunit B
RefseqXP_021313025.11e-135splicing factor U2af small subunit B
RefseqXP_021313026.11e-135splicing factor U2af small subunit B
RefseqXP_025816779.11e-135splicing factor U2af small subunit B-like
RefseqXP_025816780.11e-135splicing factor U2af small subunit B-like
RefseqXP_025816781.11e-135splicing factor U2af small subunit B-like
RefseqXP_025816782.11e-135splicing factor U2af small subunit B-like
SwissprotQ9ZQW81e-100U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A2T7DIN51e-134A0A2T7DIN5_9POAL; Uncharacterized protein
STRINGPavir.J07926.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126133
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]