PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01339.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 155aa MW: 16352.3 Da PI: 5.1521

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01339.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	73.8	3.3e-23	25	119	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavg 78 +CaaCk +rrkC++dCvlapyfpa++p++fa+v+++FGasnv +ll++ + + ++ + ++ +A a +P Ga + Zmw_sc01339.1.g00190.1.am.mk 25 RCAACKNQRRKCSPDCVLAPYFPASDPRRFACVQRVFGASNVARLLQEEIRAAQselARTQAQIAVHAAAAGAQPAVGARQ 105 6********************************************98555551115555679*************** PP DUF260 79 vilklqqqleqlka 92 ++++ q q +a Zmw_sc01339.1.g00190.1.am.mk 106 LMNAQVQAPPQQQA 119 99987777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.727	24	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-22	25	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MSTSGASTEE ASAASAANPG TGSRRCAACK NQRRKCSPDC VLAPYFPASD PRRFACVQRV 60 FGASNVARLL QEEIRAAQSE LARTQAQIAV HAAAAGAQPA VGARQLMNAQ VQAPPQQQAG 120 DALMMVQQEP CQGLDTLFLD DVRAGDNLFD DDMSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-17	14	72	1	58	LOB family transfactor Ramosa2.1
5ly0_B	3e-17	14	72	1	58	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806770.1	8e-41	LOB domain-containing protein 24-like
TrEMBL	A0A3L6TJP8	1e-41	A0A3L6TJP8_PANMI; Uncharacterized protein
STRING	Pavir.J09684.1.p	1e-32	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19720	7	8