PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01341.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 356aa MW: 39059.4 Da PI: 6.7414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01341.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	1e-52	32	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL++kv + + i+evdi+++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +g Zmw_sc01341.1.g00040.1.sm.mk 32 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDINRCEPWELPGAARMGEREWYFFSLRDRKYPTGLRTNRATGAG 111 79**********************9777.34***********8888899********************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev+++ +g+l+g+kktLvfykgrap+gekt+Wv+heyrl Zmw_sc01341.1.g00040.1.sm.mk 112 YWKATGKDREVICTtTGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 159 *******99878899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-61	21	200	IPR003441	NAC domain
PROSITE profile	PS51005	57.568	32	200	IPR003441	NAC domain
Pfam	PF02365	3.2E-27	33	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAMMMHQPQA MGDALWDILE EEMAAAAGEH GLPPGFRFHP TDEELVTFYL AAKVFNGACC 60 GVDIAEVDIN RCEPWELPGA ARMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR 120 EVICTTTGAL IGMKKTLVFY KGRAPRGEKT KWVLHEYRLD GDFAAGRRFW KVTDLSAVRL 180 YFLSSRCAQE EWVICRIFHK AVDQYSKMVM SMSPYYHPTD PSSFCFQQEP PHAALPLPNP 240 GICSGLAHAL PFHHSLENHH QGKSNVDTNG LPAASSLDQP NGSGGVNTCD SSAMPMLPAF 300 PSFASVVVTG KAAPHQQEAG VNAGPPEPPP PTLLDGYIAH SGFLYEMSPP AAPRGA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAMMMHQPQA MGDALWDILE EEMAAAAGEH GLPPGFRFHP TDEELVTFYL AAKVFNGACC  60
GVDIAEVDIN RCEPWELPGA ARMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR  120
EVICTTTGAL IGMKKTLVFY KGRAPRGEKT KWVLHEYRLD GDFAAGRRFW KVTDLSAVRL  180
YFLSSRCAQE EWVICRIFHK AVDQYSKMVM SMSPYYHPTD PSSFCFQQEP PHAALPLPNP  240
GICSGLAHAL PFHHSLENHH QGKSNVDTNG LPAASSLDQP NGSGGVNTCD SSAMPMLPAF  300
PSFASVVVTG KAAPHQQEAG VNAGPPEPPP PTLLDGYIAH SGFLYEMSPP AAPRGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-48	32	200	20	168	NAC domain-containing protein 19
3swm_B	9e-48	32	200	20	168	NAC domain-containing protein 19
3swm_C	9e-48	32	200	20	168	NAC domain-containing protein 19
3swm_D	9e-48	32	200	20	168	NAC domain-containing protein 19
3swp_A	9e-48	32	200	20	168	NAC domain-containing protein 19
3swp_B	9e-48	32	200	20	168	NAC domain-containing protein 19
3swp_C	9e-48	32	200	20	168	NAC domain-containing protein 19
3swp_D	9e-48	32	200	20	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008663651.1	1e-147	protein CUP-SHAPED COTYLEDON 1 isoform X2
Swissprot	Q9S851	5e-82	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	C0HG14	1e-147	C0HG14_MAIZE; Protein CUP-SHAPED COTYLEDON 3
STRING	GRMZM2G430522_P01	1e-146	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11237	33	41

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]