PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01354.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 138aa MW: 15677 Da PI: 9.8884

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01354.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67.6	1.7e-21	3	54	35	86
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++ Zmw_sc01354.1.g00180.1.es.mkhc 3 LLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHST 54 5789*********************************************764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.521	1	69	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.0E-22	2	72	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-18	3	53	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-19	3	56	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.41E-17	6	53	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYGLEKQ 60 LFIDYKKTPT TTEPSVRSPL EKPKEARVAV RLFGVDIAGD GCQKRERPLE MALEQGQGFL 120 KKHCLVQHQS PALGAILL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	6e-29	1	66	51	115	DNA-binding protein RAV1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968155.1	2e-72	AP2/ERF and B3 domain-containing protein Os01g0141000
Swissprot	Q0DXB1	3e-55	Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
Swissprot	Q9AWS0	6e-54	Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBL	K3XJ36	4e-71	K3XJ36_SETIT; Uncharacterized protein
STRING	Si001909m	6e-72	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]