PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01355.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 730aa    MW: 79346.7 Da    PI: 8.8352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01355.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-094989954
                                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                   r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  Zmw_sc01355.1.g00120.1.am.mk 49 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 89
                                  699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3134089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1445106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1246102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-124694No hitNo description
PfamPF000101.4E-65089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF578501.3E-19504558No hitNo description
Gene3DG3DSA:3.30.40.101.8E-19507555IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.17E-9509555No hitNo description
PfamPF136396.5E-13509552IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.357510552IPR001841Zinc finger, RING-type
SMARTSM001841.3E-7510551IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MHDPLGFPIT HQQPYIIHPA SAFSDTRGRG GGRRRPGAKL STDPQSVAAR ERRHRISDRF  60
RVLRSLVPGG SKMDTVSMLE QAIHYVKFLK AQVSLHQAAL MQHEEGCNHE LAAAYSGVDE  120
VISATNGHDA SDVAMQPLQL PVPEVANYAT MVADQLQLLD PWQMSGGSNE LPPLPSCVFV  180
EEPATTCYSE EIIPTEHTPA TSIQPCDQRQ RFLADAEPCC VPADRQRTAL AASVDETFFP  240
PPPARRFLGS ARLRVGLPCR AEGRCFQRTS RTPEARSSRK VVGSVCAHVL FRNKHGRLLL  300
LAPLTTAKLH GRSCHSMLAI ITGATGSVPL CTNAMERAVA GRLALAQLPR DGRQTELLLF  360
QQTVAENPGA GKGKNPLDHT PRARPLARAV ARGRQTRRSH PRPRATIRAL FNPIEALRWR  420
YGDVDDGNFA VRGRGVPLLA ALLAVLVCFV AVCLYLRRAC LHYYRPWYPE PFLTAAALPA  480
STSARGLDDA AVAALPVTMY RPKGGAEQCC PICLGEFAEG DKVKALPRCG HGFHPDCVDP  540
WLRARGSCPL CRASLLFATA KPVGVVGSEA WHCPKRLGDA SIVEDRLGAF FGCQDWVEMY  600
STSNSQAITE ESVAMARVRL IRLLGNQEAS DAGTRQPLGC SSWVLVQDSR DSDGCHCDLE  660
EGQSETERGT CPCCKGGRFD VGNRKKKDTN RAYHRERCKS NAVAVKLGAN PRFYRAAGGG  720
AAGRGGSLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1iym_A3e-12510556854EL5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243