PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01356.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 369aa    MW: 38243.5 Da    PI: 6.9814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01356.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-05252292954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+r+  ++  L++l+P        +l+ a++L +A  Y++ L
  Zmw_sc01356.1.g00050.1.am.mk 252 ARLRRERVSARLRALQRLVPGG-----SRLDTASMLDEAASYLRFL 292
                                   599*****************95.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.47E-10234297No hitNo description
PROSITE profilePS5088813.967243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-11249300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-8249300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDGAFSWSTQ YAAEPCLPSR ASDDGLLGAF ICTSFPDGAL HPDHGSLDMS FPSLVRCHGG  60
AGPCDSVSAA FMGLDTAADT FPSVTGAAVD GDLFDAFAEV LPEQATVSNS NTVFSGYISI  120
TGGNISSGES NTCGGGNGGQ DMEVASPCAV SLSTQLQTPK TLPTSKRKRS TSITFGGQSF  180
HHHHAQASAT PTGIGDEPDA EAIAQAKVMI YRAAAMRPLH QLTRLAATDD PHQNKSRRRN  240
VRISSDPQTV AARLRRERVS ARLRALQRLV PGGSRLDTAS MLDEAASYLR FLRAQLEALA  300
SAGNPSNGGD GGYLICNGSS LQPQQNYTGN IGVGGGTSGS GGGGALLAFG SKDCGINRGY  360
VKSNRNMPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961359.11e-90transcription factor BHLH089
SwissprotA0A0P0WQ902e-50LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLK3Z6V53e-89K3Z6V5_SETIT; Uncharacterized protein
STRINGSi022274m4e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]