PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01358.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 335aa    MW: 35022.6 Da    PI: 9.4286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01358.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021241263123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C k+F++   L  H r+H
  Zmw_sc01358.1.g00140.1.am.mk 241 HECHVCRKTFPTGQALGGHKRRH 263
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.468179206IPR007087Zinc finger, C2H2
PfamPF139124.1E-12179202IPR007087Zinc finger, C2H2
SuperFamilySSF576679.18E-8179201No hitNo description
SMARTSM003550.08179201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SuperFamilySSF576679.18E-8236263No hitNo description
PfamPF139121.2E-11241265IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162241263IPR007087Zinc finger, C2H2
SMARTSM003550.13241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
LSAAPQLGRT RPGQSCAWVE LARRASSRGL WAVPQLGSAR PGRSCAWVEW AMSGWAVTRT  60
SDLPVQALLV NTAPAGCGDV SASNSSYSTT LPRGCFDRQE KAMAVDAILD ATVAAATSSD  120
QEAEASTSSM VTVKRRRSRP PKRLPRKEPT EEEYLALCLV MLSRGRRGAG PEGDDLLIHA  180
CSVCGKAFAS YQALGGHKAS HRNPAPPAKE DQKPPSPPSS SSARSASGND KAPSAAATAL  240
HECHVCRKTF PTGQALGGHK RRHYDGTLGS AAAPARSSSS SKLGEGISRA AARAAAPVGF  300
IDLNLPALPE PCAAQDEDEV LSPLACKKPR LMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.14e-56zinc finger protein 1-like
SwissprotQ424301e-39ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3L6R6994e-55A0A3L6R699_PANMI; Zinc finger protein 1-like
STRINGSb08g019490.15e-48(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113