PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01358.1.g00220.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 199aa    MW: 21079.9 Da    PI: 6.1139
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01358.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-3261116156
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                   k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Zmw_sc01358.1.g00220.1.sm.mk  61 KARRCWSPELHRRFVAALQRLGGAQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 116
                                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.71958118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2959119IPR009057Homeodomain-like
SuperFamilySSF466892.87E-1859119IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2661116IPR006447Myb domain, plants
PfamPF002491.9E-763114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPLNNGLQAA SARPTEAATP LPDLSLSSPA TDGSCPAAPS ATSSAVTDAG AAQRQQQGQR  60
KARRCWSPEL HRRFVAALQR LGGAQAATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRS  120
SSSDGTVDGQ AATTLWSGPE EQQQQYTTSQ HSTSQSGSPQ GPLQLTVSSR AVSVTAGGDS  180
CYDDGDEEED EKAESRSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1561114154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1561114154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1561114154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1561114154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.13e-74transcription factor NIGTH1-like
TrEMBLA0A0A9CL965e-82A0A0A9CL96_ARUDO; Uncharacterized protein
STRINGPavir.Ca02525.1.p4e-77(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353