PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01366.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 360aa MW: 39062 Da PI: 6.6273

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01366.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	13	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+++yL +k+++ ++ + +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+ Zmw_sc01366.1.g00250.1.sm.mkhc 13 LPPGFRFHPTDEELITQYLGRKAADPRFAA-RAVGEADLNKCEPWDLPSRATWGEKEWYFFCVKDRKYPTGLRTNRATE 90 79***********************999.88***********988899********************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 sgyWkatgkd+e+++ ++ lvg+kktLvfy+grapkg kt Wvmheyrle Zmw_sc01366.1.g00250.1.sm.mkhc 91 SGYWKATGKDREIFR-GKVLVGMKKTLVFYTGRAPKGGKTGWVMHEYRLE 139 ***********.99****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	8	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.658	13	174	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEHDVHHHQD MELPPGFRFH PTDEELITQY LGRKAADPRF AARAVGEADL NKCEPWDLPS 60 RATWGEKEWY FFCVKDRKYP TGLRTNRATE SGYWKATGKD REIFRGKVLV GMKKTLVFYT 120 GRAPKGGKTG WVMHEYRLEE KRVTNGGAGS GNVFLSSTAA TSKEEWVLCR VFKKNIERPT 180 VAGGKRSGSS SFMETADVCP SISVADELAA ACALPPLMDV STVSGGVHMS LSAAAAIELL 240 PPPAHVTCFS NALESPFLNP AFIVPSATAP ASAAAHGAAV VADHLAVASP SPFLQMQYEG 300 AAGGLVQELL LHEGGGWYSK HGERERLSGA SQDTGVTSEV NPAETSSREH MNHEASLWDY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEHDVHHHQD MELPPGFRFH PTDEELITQY LGRKAADPRF AARAVGEADL NKCEPWDLPS  60
RATWGEKEWY FFCVKDRKYP TGLRTNRATE SGYWKATGKD REIFRGKVLV GMKKTLVFYT  120
GRAPKGGKTG WVMHEYRLEE KRVTNGGAGS GNVFLSSTAA TSKEEWVLCR VFKKNIERPT  180
VAGGKRSGSS SFMETADVCP SISVADELAA ACALPPLMDV STVSGGVHMS LSAAAAIELL  240
PPPAHVTCFS NALESPFLNP AFIVPSATAP ASAAAHGAAV VADHLAVASP SPFLQMQYEG  300
AAGGLVQELL LHEGGGWYSK HGERERLSGA SQDTGVTSEV NPAETSSREH MNHEASLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-57	11	175	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-57	11	175	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-57	11	175	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-57	11	175	15	166	NO APICAL MERISTEM PROTEIN
4dul_A	5e-57	11	175	15	166	NAC domain-containing protein 19
4dul_B	5e-57	11	175	15	166	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952889.1	1e-169	NAC domain-containing protein 92
Refseq	XP_022679460.1	1e-169	NAC domain-containing protein 92
TrEMBL	K3YTH5	1e-168	K3YTH5_SETIT; Uncharacterized protein
STRING	Si017567m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87