PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01368.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 373aa MW: 40477.4 Da PI: 6.2903

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01368.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.1e-13	211	258	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +ErrRR+++ + f L +l+P + +K +K++iL ++eY+k+L+ Zmw_sc01368.1.g00070.1.am.mk 211 QEHVVAERRRREKMQQQFVALATLVPDL-----TKTDKISILGSTIEYVKQLE 258 57999********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.135	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	211	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-17	212	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	212	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-12	213	262	No hit	No description
SMART	SM00353	1.6E-13	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MRLASALLPS PATDEGRGVS DECSDVKAPV GREAQPSHFD QCGSKEEAVD RTRPRSRKGP 60 ARWVLHTSQI WGCVARVTGA VAAAPELEDE LERMYQHEEQ PGMLAHPPPE QQRYYTSPQA 120 MAPPNPYHPS PHSQSSAFPS FGPGHALPTP PFRGVAVKNE VGQPSSSTSN ILSFGGQQTR 180 TLSFSAGDWT DGTEAVQQVP ERRNRTHLNT QEHVVAERRR REKMQQQFVA LATLVPDLTK 240 TDKISILGST IEYVKQLEEK VRTLEEQSAT GASDPTVFEG KCRISSDNVD ASWPNASASA 300 GAISGYVPTV EASIHGDTVL VKICCKEGRG VLVMVFSEVE NHGLSILSTS VLPFTDSCLS 360 ITITAKARLL VLD

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MRLASALLPS PATDEGRGVS DECSDVKAPV GREAQPSHFD QCGSKEEAVD RTRPRSRKGP  60
ARWVLHTSQI WGCVARVTGA VAAAPELEDE LERMYQHEEQ PGMLAHPPPE QQRYYTSPQA  120
MAPPNPYHPS PHSQSSAFPS FGPGHALPTP PFRGVAVKNE VGQPSSSTSN ILSFGGQQTR  180
TLSFSAGDWT DGTEAVQQVP ERRNRTHLNT QEHVVAERRR REKMQQQFVA LATLVPDLTK  240
TDKISILGST IEYVKQLEEK VRTLEEQSAT GASDPTVFEG KCRISSDNVD ASWPNASASA  300
GAISGYVPTV EASIHGDTVL VKICCKEGRG VLVMVFSEVE NHGLSILSTS VLPFTDSCLS  360
ITITAKARLL VLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	ERRRRE
2	217	222	RRRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021316601.1	1e-107	transcription factor bHLH18
Refseq	XP_021316605.1	1e-107	transcription factor bHLH18
TrEMBL	A0A3L6SAV4	1e-109	A0A3L6SAV4_PANMI; Uncharacterized protein
STRING	OB03G19470.1	2e-97	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49