PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01369.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 903aa    MW: 97367.6 Da    PI: 9.7111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01369.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.43.9e-30596693192
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zmw_sc01369.1.g00180.1.am.mk 596 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 676
                                   89***************************955556889******************************************* PP

                                   -EEEEEE-.SS.SEE.. CS
                            B3  78 DfvvFkld.gr.sefel 92 
                                   D+++F++  g+  + +l
  Zmw_sc01369.1.g00180.1.am.mk 677 DTITFSRGaGEaARDRL 693
                                   ******65344455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-40586702IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-28593684IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-25594683No hitNo description
PfamPF023621.4E-27596699IPR003340B3 DNA binding domain
PROSITE profilePS5086314.24596701IPR003340B3 DNA binding domain
SMARTSM010191.1E-22596701IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MMEASWAVSS PHIEARCVGT ARSHACCTDH DQLINNTDTH GRSILCRSVV PVLVVHSVLT  60
RQAEERRRTR SANKDSVRRV DLLRSLSLPI QAWARARTTT PPPIVRSPAK SNKAHRFALF  120
GSPAKFDSPR SLCGGAAGTH AAACALQIAL VGGLPFPFPC AALLSQLAND RTSGEGISMD  180
TLVEGLSNPT RLFVSGKPHQ DTSLLECPFD EGRATPRQEE TNKVESQESG KLARICRAET  240
FPAHIACDHR LAPPSVRGIC LRLRWATALV SRLIPHSRPP SHIMTRTSSH EPNQLIPSGP  300
HPSPAFLQSY SYTLRAVPPS LTSPRVGTQP AFPQLSASRS LAHFIQANEP TITTRSVSLP  360
INLISLLAAA SSDAHGQCEA RRADEALRIP ASRSAVSTSS DLKLAEPNSL AYQHLLLVEV  420
VAVERWKRSR YSLDRLIADR SPASSALSRP SERASNQTTG RARPSRTVAS HRRGCRSARS  480
PEGRGRDRGG GQKAAPRREA RVVDMDFSAS SSRFSKEEDE EEEQEHEEEE DDEASPREIP  540
FMTAAAVSTA AASSSSPSAS ASASALRSSD GAGASGSGGG GGGSDDVEVI EKEHMFDKVV  600
TPSDVGKLNR LVIPKQHAEK YFPLDSAANE KGLLLSFEDR AGKLWRFRYS YWNSSQSYVM  660
TKGWSRFVKE KRLDAGDTIT FSRGAGEAAR DRLFIDWKRR ADVSDPHRLP RIPLPMPPAA  720
SPYGPWGGGA GGFFMPPAPP ATLYEHHRLR QSLDFRNVNA AAPARQLLFF GSAGMPPPGP  780
MLPPPPPVHI TVQPSPAVTA GLPMVLESVP LVNSPTAASK RLRLFGVNLD NPHPGGGESS  840
HDANALSLRM PGWHRPSPLR LFELPHHQQN VAGAAGVESS AASSPSSSSS SKREAHSSLD  900
LDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-585917033116B3 domain-containing transcription factor NGA1
5os9_B2e-585917033116B3 domain-containing transcription factor NGA1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168