PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01380.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 568aa    MW: 60022.4 Da    PI: 8.5995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01380.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-053759123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+k F r  nL+ H r H
  Zmw_sc01380.1.g00040.1.am.mk 37 FVCEVCNKGFQREQNLQLHRRGH 59
                                  89*******************88 PP
2zf-C2H211.90.0007114136123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zmw_sc01380.1.g00040.1.am.mk 114 WKCDKCTKRYAVQSDWKAHSKIC 136
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-73659No hitNo description
Gene3DG3DSA:3.30.160.607.8E-63659IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.7E-53759IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0943759IPR007087Zinc finger, C2H2
SMARTSM003550.00413759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SMARTSM0035515079109IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-4102135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.86E-7109134No hitNo description
SMARTSM00355160114134IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPLRSIKSTE IVACIPADPD AEVIALTPKT LMATNRFVCE VCNKGFQREQ NLQLHRRGHN  60
LPWKLKQKDP SQAQRRRVYT CPEPTCAHHD PARALGDLTG IKKHFCRKHG EKKWKCDKCT  120
KRYAVQSDWK AHSKICGTRE YRCDCGTLFS RPAHLAIPSS HGCNIQGFSR ERIYTHYSGT  180
LILDWLGEVV TPRFTKAFCD ALAQESARLP PTGGLIAGHF YGATGAANMA LSLSQVGSHL  240
ASTLGADVHG HHQDLLRHGG VSGTTRLNHL LGPSGDVAFR PMPPPPASAF LMGAPQEFGD  300
GTGSQMYGKP FHGLMHLPDL QGNSAGGQTA SSAPGLFNLG YIASSGNSSG TSSHGHPSQG  360
HMASDQFSEG GGGGGGGGGS ESSAAVFFNT GGNFSGGELH VAPGRVYNEQ AVVLPQMSAT  420
ALLQKASQMG SSTSAHGGAS VFRSVVGSSA PSAPQGRAPM VDQSQMHLQS LMNSLAGGGM  480
FGGTNSGNMI DPRLYDMDDQ HVKFTQQQQQ SRGGAEMTRD FLGVGGGAAM RGMPVARGEH  540
YDGAVGDMSS LEAEMKSASS SFTGGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-22110209365Zinc finger protein JACKDAW
5b3h_F1e-22110209365Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.20.0INDETERMINATE-related protein 10
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGSb04g032140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798