PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01394.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28183.3 Da    PI: 10.7219
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01394.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    +ri+n +nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+lye+ss
  Zmw_sc01394.1.g00160.1.am.mkhc  9 ERIDNRTNRQVTFSKRRSGLMKKARELGILCDADVGLIVFSCTGRLYEFSS 59
                                    69***********************************************96 PP
2K-box72.11.7e-241212021697
                           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                      +q+e+a L+++ +nLq ++RhllGe+L+ L++++Lq L++q+e sl++iR+kK++ll ++i  l +k  +lq+en +L
  Zmw_sc01394.1.g00160.1.am.mkhc 121 FWQREVATLRQQAQNLQLNNRHLLGEELSGLTVRDLQFLQNQVEMSLQSIRKKKEQLLADEIMLLNQKGLALQKENIEL 199
                                     69***************************************************************************** PP

                           K-box  95 rkk 97 
                                     +k+
  Zmw_sc01394.1.g00160.1.am.mkhc 200 KKE 202
                                     987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-31276IPR002100Transcription factor, MADS-box
CDDcd002652.30E-41271No hitNo description
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.246119209IPR002487Transcription factor, K-box
PfamPF014865.1E-23121202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGKIAIER IDNRTNRQVT FSKRRSGLMK KARELGILCD ADVGLIVFSC TGRLYEFSST  60
SMKSIIERYQ EAREENNSRL LNPVAEAKAN HRGRRRLGGG QYCLALAIPM SQRSDPRLNF  120
FWQREVATLR QQAQNLQLNN RHLLGEELSG LTVRDLQFLQ NQVEMSLQSI RKKKEQLLAD  180
EIMLLNQKGL ALQKENIELK KEASIARRHK IELQKKLSAG KSTSGDREEA SGGSSDAFPM  240
NHPTIKSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23187187MEF2C
5f28_B2e-23187187MEF2C
5f28_C2e-23187187MEF2C
5f28_D2e-23187187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817983.11e-104MADS-box transcription factor 25-like
SwissprotQ84NC54e-93MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A2S3HW571e-102A0A2S3HW57_9POAL; Uncharacterized protein
STRINGPavir.J07457.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]