PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01398.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 478aa    MW: 53380.1 Da    PI: 6.8302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01398.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.92.3e-87344654374
                          GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl 83 
                                   +L ecA +v++g +  a+++L+r+  la+  + pm Rla  ++ ALa+ l+     + +al +ps+    ++ ++ aa+  
  Zmw_sc01398.1.g00180.1.am.mk  34 ALWECAAHVAAGRFDGASRCLERVLGLAAIGDGPMPRLARILADALARYLLLRLGPVNRALiQPSAYL--DQRSVRAARDG 112
                                   699*********************************************99997888887774555554..45555578889 PP

                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   f+++ P+l++++++ N+aIl+a+++e+ vH+iD++  + ++ QW+ L++a+  Rp+g+p+l iT+v++    +   l  + 
  Zmw_sc01398.1.g00180.1.am.mk 113 FVKLLPFLRVAYVAINRAILDATDKEKYVHVIDLSgpAANPWQWLKLMRAMCRRPGGAPNLHITVVHD----DGVFLADMW 189
                                   **********************************866799****************************....9******** PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll......................... 214
                                    rL+k Ae+l++ f f+     rle+l++++L    ++++g a   +++lq+hrll                         
  Zmw_sc01398.1.g00180.1.am.mk 190 ARLRKEAESLNMAFTFHG-FLGRLETLDFDKLhdvlDIRSGYARCFSCALQMHRLLavddaaavnvgtstqaswpsgasrf 269
                                   ******************.689999999999866668999***************************************** PP

                          GRAS 215 .................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                                                                    + +  ++   +++ ++v+ +sPkv+vvveqea+hn+++F+ rf ea+ 
  Zmw_sc01398.1.g00180.1.am.mk 270 vrfaggqemnksnvhpdpspttplclvaptptpSPPSRVPPLLTRFQHAVRAVSPKVLVVVEQEANHNEPEFAVRFQEAFG 350
                                   *****************************9987555555557889************************************ PP

                          GRAS 263 yysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                   yy+alfd+l +   p+ +  eer+ vE++llg+ei++v+  eg errerhe l++W +r+  aGF+pvpls++a ++a+ +
  Zmw_sc01398.1.g00180.1.am.mk 351 YYAALFDALqDRAGPEGQmhEERAQVEQVLLGEEIKDVLVREGVERRERHEPLHRWAARMAPAGFGPVPLSYEAKNEADEV 431
                                   *********65555655588************************************************************* PP

                          GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   lrk + ++y+  e+ ++l+l+ ++rpL++vSaWr
  Zmw_sc01398.1.g00180.1.am.mk 432 LRKLALREYENREHGNCLLLCRSERPLYAVSAWR 465
                                   *****999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.8885445IPR005202Transcription factor GRAS
PfamPF035148.0E-8534465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MMDHPASNAR QQPPQEQEDE EGRLDASLVH LPLALWECAA HVAAGRFDGA SRCLERVLGL  60
AAIGDGPMPR LARILADALA RYLLLRLGPV NRALIQPSAY LDQRSVRAAR DGFVKLLPFL  120
RVAYVAINRA ILDATDKEKY VHVIDLSGPA ANPWQWLKLM RAMCRRPGGA PNLHITVVHD  180
DGVFLADMWA RLRKEAESLN MAFTFHGFLG RLETLDFDKL HDVLDIRSGY ARCFSCALQM  240
HRLLAVDDAA AVNVGTSTQA SWPSGASRFV RFAGGQEMNK SNVHPDPSPT TPLCLVAPTP  300
TPSPPSRVPP LLTRFQHAVR AVSPKVLVVV EQEANHNEPE FAVRFQEAFG YYAALFDALQ  360
DRAGPEGQMH EERAQVEQVL LGEEIKDVLV REGVERRERH EPLHRWAARM APAGFGPVPL  420
SYEAKNEADE VLRKLALREY ENREHGNCLL LCRSERPLYA VSAWRPWTFE VLDSINMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-13311465221375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.11e-125scarecrow-like protein 3
TrEMBLA0A1D6QHE21e-145A0A1D6QHE2_MAIZE; Scarecrow-like protein 3
STRINGOS12T0138200-001e-124(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176