PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01401.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 549aa    MW: 58245.2 Da    PI: 6.5054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01401.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007387104219
                                   EETTTTEEESSHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                   +C++Cgk F++++ +  H
  Zmw_sc01401.1.g00140.1.sm.mk  87 VCKNCGKEFTSWERFLDH 104
                                   7***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-5533No hitNo description
PROSITE profilePS5015710.159835IPR007087Zinc finger, C2H2
SMARTSM003552.7830IPR015880Zinc finger, C2H2-like
PfamPF139120.0069932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM0035521086106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.34E-7254277No hitNo description
PfamPF139121.5E-8255279IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221255282IPR007087Zinc finger, C2H2
SMARTSM003550.25255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-7365392No hitNo description
PfamPF139124.6E-11370393IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182370392IPR007087Zinc finger, C2H2
SMARTSM003553.7370392IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280372392IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MPSPEYKHFC RVCNKGFICG SALGGHMRAH SSSDDVFAGA GADDGDEPAR GRGPSDDQWD  60
AAGTSSSTTH AYALRANPNR QVRSCQVCKN CGKEFTSWER FLDHGRCNSD DEGRAEGSGS  120
PRRSLSPSSE ADEGEEDPAV SATEWSKGKR SRRVKSVAAL DDAPATSSRR FMSGEEEDLA  180
NCLVMLSSSN TEQAATVTRT NTQQKQSASV SRERDRGPQL LHQISFLAQA PDPVMALPSA  240
TTTIQYVSPA PRGMFECKAC KKEFTSHQAL GGHRASHKKV KGCFAARLES NVSKTPSHAA  300
PVDRNEDNGK AVVVEGSTHA TTDAKPAGTD GDTNVRTTSE TAAALSMALA PVAAFNVAEA  360
PSGKKNAKMH ECSVCHRLFT SGQALGGHKR CHWLNSSTAD PTIPVANLSV PPITEDLVGA  420
VRHQLMLRPM VDASEPALDL TISAKPSTLT PAPGSSTFHL DASAQALHLQ SSVEPGNASH  480
RNTCGHDDND VAATASNAAQ DESESISIKR SRLTDLKDVV RMDEEASEPW LQVGIGSSSA  540
GGDEKNSRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A1E5WGG60.0A0A1E5WGG6_9POAL; Uncharacterized protein
STRINGPavir.Gb01112.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262