PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01404.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 226aa    MW: 24112.8 Da    PI: 7.8471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01404.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30110168159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  Zmw_sc01404.1.g00040.1.am.mkhc 110 LDDGFRWRKYGKKAVKSSPNPRNYYRCSVEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 168
                                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-3197168IPR003657WRKY domain
SuperFamilySSF1182904.18E-27102168IPR003657WRKY domain
PROSITE profilePS5081130.699105170IPR003657WRKY domain
SMARTSM007742.0E-34110169IPR003657WRKY domain
PfamPF031068.4E-24111167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAASLGLGGH EAYPPAASLC FPPDLAVANN CAATVAEDCF PEFGAVFPPS QDYYDWTPHQ  60
VFAENEMSMR FVDAGRRRMV STAAGTGGNG CSRRPSSRIG FRTRSEVDVL DDGFRWRKYG  120
KKAVKSSPNP RNYYRCSVEG CGVKKRVERD RDDPRYVVTT YDGVHNHAAG AGAGAAGGHH  180
NAPVQQALAP YAPAGTVTGA PPPPEVWGTM QLHAAAAMAN SSESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-27100167774Probable WRKY transcription factor 4
2lex_A7e-27100167774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968484.14e-60WRKY transcription factor WRKY24
TrEMBLK3XL481e-58K3XL48_SETIT; Uncharacterized protein
STRINGPavir.Ea00274.1.p2e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206