PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01424.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 366aa MW: 39858.2 Da PI: 5.3042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01424.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.4e-50	16	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya........ 69 l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp+ ++++++++wyfF++ d+k + Zmw_sc01424.1.g00160.1.am.mkhc 16 LAPGFRFHPTDEELVSYYLRRRILGRRLRV-DAIAEVDLYRLEPWDLPAlsSIRSRDNQWYFFTRLDRKITgagaggrg 93 579*************************.99***********4458888999*******9977777766 PP NAM 70 .tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+r+nrat++gyWk+tgkd+ev++ +g+lvg+kktLvf++grapkg +t+Wvmheyrl Zmw_sc01424.1.g00160.1.am.mkhc 94 gPGNRTNRATQQGYWKTTGKDREVYH-RGKLVGMKKTLVFHNGRAPKGARTNWVMHEYRL 152 5567******************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-53	12	158	IPR003441	NAC domain
PROSITE profile	PS51005	50.888	16	172	IPR003441	NAC domain
Pfam	PF02365	7.2E-28	18	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSNLSPLDSS PAEVRLAPGF RFHPTDEELV SYYLRRRILG RRLRVDAIAE VDLYRLEPWD 60 LPALSSIRSR DNQWYFFTRL DRKITGAGAG GRGGPGNRTN RATQQGYWKT TGKDREVYHR 120 GKLVGMKKTL VFHNGRAPKG ARTNWVMHEY RLIDADGPQN GAQYGAPYME EEWEDDDDAV 180 EKGAAIGASA NVAATSNAAD EESNEEEENG YSKASELAQG DYEDNSTFDG ISKTSVANGH 240 SGASSSCFHE DQYPENAVQA DKPLGKLASM LGSIPAAPAF ASEDPPAARK SLLTGVNPSS 300 IRVTAGIVQL GGLNFTASEH RPLQKNGDFS LLLSFTMESN VASKSLSFEP DTQVGAIPMV 360 MRGGLY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSNLSPLDSS PAEVRLAPGF RFHPTDEELV SYYLRRRILG RRLRVDAIAE VDLYRLEPWD  60
LPALSSIRSR DNQWYFFTRL DRKITGAGAG GRGGPGNRTN RATQQGYWKT TGKDREVYHR  120
GKLVGMKKTL VFHNGRAPKG ARTNWVMHEY RLIDADGPQN GAQYGAPYME EEWEDDDDAV  180
EKGAAIGASA NVAATSNAAD EESNEEEENG YSKASELAQG DYEDNSTFDG ISKTSVANGH  240
SGASSSCFHE DQYPENAVQA DKPLGKLASM LGSIPAAPAF ASEDPPAARK SLLTGVNPSS  300
IRVTAGIVQL GGLNFTASEH RPLQKNGDFS LLLSFTMESN VASKSLSFEP DTQVGAIPMV  360
MRGGLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-44	12	152	11	140	Stress-induced transcription factor NAC1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570443.1	5e-89	NAC domain-containing protein 78
TrEMBL	A0A0D9VMU5	5e-99	A0A0D9VMU5_9ORYZ; Uncharacterized protein
STRING	LPERR02G31180.1	1e-100	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12931	28	33