PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01433.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 127aa MW: 13758.9 Da PI: 11.0412

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01433.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.7	3.6e-24	75	125	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRr+g++KKA+ L + Cda++ vi+f +tg+ly++s+ Zmw_sc01433.1.g00060.1.am.mk 75 KRIENEANRQVTFSKRRAGVFKKAKGLATFCDAQIGVIVFTNTGQLYDFSN 125 79***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00404	6.2E-21	69	89	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.5E-26	70	126	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-21	70	126	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.913	70	127	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-21	76	123	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-21	89	104	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-21	104	125	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MHRFLIRRLT PAGLVTADVV FDLLSASRVI QTASLSLSLC GSSPRLSHFS LPSASPPATS 60 ALNLGLWCGG KTVLKRIENE ANRQVTFSKR RAGVFKKAKG LATFCDAQIG VIVFTNTGQL 120 YDFSNSW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398