PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01434.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 499aa    MW: 53712.3 Da    PI: 8.6469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01434.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07237258426
                                     ---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                     ++C++f++ G C+yG+rC++ H+
  Zmw_sc01434.1.g00050.1.am.mkhc 237 RPCKYFLA-GDCSYGERCRYPHS 258
                                     79******.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.718156182IPR000571Zinc finger, CCCH-type
SMARTSM003560.1157181IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582233260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5234258IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5237258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4237259IPR000571Zinc finger, CCCH-type
SuperFamilySSF509784.03E-29264492IPR017986WD40-repeat-containing domain
SMARTSM003201.0E-5264303IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.8E-27266492IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004002.8E-5269303IPR001680WD40 repeat
PROSITE profilePS5029412.736271312IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.783271312IPR001680WD40 repeat
PROSITE patternPS006780290304IPR019775WD40 repeat, conserved site
SMARTSM00320440306341IPR001680WD40 repeat
SMARTSM0032016343380IPR001680WD40 repeat
SMARTSM0032047387451IPR001680WD40 repeat
SMARTSM0032016454491IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
VPGRACAATA GEDCCSPAPV HATTAARRLF GGRCKDCGMA RAAEALMAPA EGAIGMDARA  60
PFWEEAMRQC NRYRAIAPFF TDPDLPHELR RALAASLPHD PTPRIYIYLY LSGFPPLRPP  120
NPDYLARPPM DIEADRRFGN KRVHRLGPGS GGPPSSTNGK VCNYWRQGRC NRFPCPFLHS  180
ELPEASAPTK RSTGPGGIVW RNPNVGGRGG GSGGGYNRWG KGPGGGGSTA SHKPPDRPCK  240
YFLAGDCSYG ERCRYPHSYH ISDSITMLAP LKGHERVITG IALPTGSDKL YTGSKDGTVR  300
MWDCQTGQCS GVINIGHEVG CMIIEGAWLF VGIPDAVKVW NMQTAAEMNL TGPAGQVYAL  360
AVANELLFAA TQDGRILAWR FSATTNCFEP AASLVGHQFA VVSLVVGGMR LYSASMDKTI  420
KGALVLSGMP DAQSKPVLLC SLNDNTVRLY DLPSFSDRGR IFSKQEIRAI QMGPSGLFFT  480
GDGTGELKVW QWIIEGSQT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454483.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D3F8V10.0A0A0D3F8V1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G28370.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]