PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01434.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 223aa    MW: 24103.9 Da    PI: 5.6274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01434.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1851101155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  Zmw_sc01434.1.g00070.1.sm.mk  51 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 101
                                   68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1451101IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2152110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-3052111IPR001471AP2/ERF domain
PROSITE profilePS5103221.69452109IPR001471AP2/ERF domain
SMARTSM003801.4E-2652115IPR001471AP2/ERF domain
PRINTSPR003672.7E-85364IPR001471AP2/ERF domain
CDDcd000181.61E-2953111No hitNo description
PRINTSPR003672.7E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDVGALSSDY SSGMPSPVGG SDGSSASYMT VSSAPPKRRA GRTKFKETRH PVYKGVRRRN  60
PGRWVCEVRE PHGKQRIWLG TFETAEMAAR AHDVAALALR GLGACLNFAD SPRLLRVPPL  120
GAGHDEIRRA AAEAAEQFRP AFSQDQGNVA VEEPITTLPD LLSSETHSTD RHPYCVVDDK  180
FDLGMQGYLD MAQGMLIDPP PMEGSSGNGG DDDDGGEVKL WSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-117dehydration-responsive element-binding protein 1G
SwissprotQ6EP773e-95DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLK3YVG61e-116K3YVG6_SETIT; Uncharacterized protein
STRINGSi018262m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]