PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01439.1.g00350.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 491aa    MW: 52968.9 Da    PI: 5.5391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01439.1.g00350.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30293352159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Zmw_sc01439.1.g00350.1.sm.mkhc 293 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 352
                                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-32278354IPR003657WRKY domain
SuperFamilySSF1182902.35E-27286354IPR003657WRKY domain
PROSITE profilePS5081128.529288354IPR003657WRKY domain
SMARTSM007741.4E-37293353IPR003657WRKY domain
PfamPF031068.4E-27294352IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSSKKKRVAI DLSLDVEKTE EDRSSGDDGD GSFKDGEMDK EDGQLERHGE ALKEETNEKK  60
VAEVVVDQGG KGSKEEIKFR TQPGEMVEEK HSDDKSDGVE TRAKGKHVVE NARNGGDDNH  120
TNMEQEDEVS AMHEEMEKMK EENRMLRQVV DRTVRDFYEL QMKEPEPEVF LSLGAAAGFR  180
EPNLKLKEQA TTRRPSLSSD DTDDGKEANL GLSLSLGAPY EEKLEAGGHD HDGATVDGDG  240
KVTGNNAFLE SSKLGPPPAA GDLAAAGITS QSVNPANRKT RVSVRVRCQG PTMNDGCQWR  300
KYGQKVAKGN PCPRAYYRCT VAPGCPVRKQ VQRCLEDMSI LVTTYEGTHN HPLPVGATAM  360
ASTTSGAAAT LMLFSSTNLP SSISDAGGAT ASPPYLSPYL LNSASHHSAA SPLLSTPPSM  420
SSGASGLQHL NLFERSSMLA QQAPLFSKYT PDRPRTPASF MLRKDGQVMG GKDGESSGTN  480
KWGVVVSLPP R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21280356176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452890.11e-153probable WRKY transcription factor 9
SwissprotQ9C9F01e-64WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1E5W6Z81e-152A0A1E5W6Z8_9POAL; Putative WRKY transcription factor 9
TrEMBLC5XSY11e-152C5XSY1_SORBI; Uncharacterized protein
STRINGSb04g034440.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446