PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01442.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 439aa MW: 45468.5 Da PI: 5.7339

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01442.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	335	375	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L Zmw_sc01442.1.g00100.1.am.mk 335 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 375 69****************966......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.869	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-11	331	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-13	332	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-11	332	380	No hit	No description
SMART	SM00353	4.0E-13	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-5	335	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MDHSFSDLLL SNSAWSGAGD GGAVVLPTDL GSGGGSGVVD GSSMSVLERL VLDEALAAAI 60 LELQQQQQGI TAAAPKMPAG GGGGGGVGDA VAFPATSTLT FPYADVDADV LQRQQHRHRH 120 HAAMAMVADY DLTPATAAVA AVTSALFTNA ASAGDGGTLG DPRVLTGTET AVTTAVSVVV 180 TTTTKSQQCE EERDGGCFSG QKQRRTSRKR NAASSAPTQE SSLCSLLASS TAGDGGGIQI 240 AFSTSAQQAP GANKRSKPSL SSGSSSISFD GRIAGAGGED PVYEPDTEAL AQVKEMIYRA 300 AAMRPVSLGP ELEEAGERPR RRNVRISSDP QTVAARQRRE RISERLRVLQ KLVPGGAKMD 360 TASMLDEAAN YLRFLKSQVR ELQTLDRRNY GNANANSSSA ATMAEAPLSY NNGHGGVPSF 420 AFPATETLLE ARGGVEQRI

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MDHSFSDLLL SNSAWSGAGD GGAVVLPTDL GSGGGSGVVD GSSMSVLERL VLDEALAAAI  60
LELQQQQQGI TAAAPKMPAG GGGGGGVGDA VAFPATSTLT FPYADVDADV LQRQQHRHRH  120
HAAMAMVADY DLTPATAAVA AVTSALFTNA ASAGDGGTLG DPRVLTGTET AVTTAVSVVV  180
TTTTKSQQCE EERDGGCFSG QKQRRTSRKR NAASSAPTQE SSLCSLLASS TAGDGGGIQI  240
AFSTSAQQAP GANKRSKPSL SSGSSSISFD GRIAGAGGED PVYEPDTEAL AQVKEMIYRA  300
AAMRPVSLGP ELEEAGERPR RRNVRISSDP QTVAARQRRE RISERLRVLQ KLVPGGAKMD  360
TASMLDEAAN YLRFLKSQVR ELQTLDRRNY GNANANSSSA ATMAEAPLSY NNGHGGVPSF  420
AFPATETLLE ARGGVEQRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	340	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814680.1	1e-121	transcription factor LATE FLOWERING-like
TrEMBL	A0A3L6STE1	1e-131	A0A3L6STE1_PANMI; Transcription factor bHLH87-like
STRING	OMERI01G17570.1	1e-122	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106