PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01453.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 369aa MW: 39015.5 Da PI: 4.9949

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01453.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.8e-35	11	102	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y ++ed++++++isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv ++ weF+ Zmw_sc01453.1.g00020.1.sm.mk 11 FLTKTYAMVEDPSTDDTISWNDTGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFA 82 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F++g+k+ll i+r+k Zmw_sc01453.1.g00020.1.sm.mk 83 NDCFRRGEKHLLGGIQRRKG 102 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.7E-38	7	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.4E-56	7	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.36E-34	8	100	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-31	11	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-19	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-19	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	50	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-19	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.20.5.170	3.4E-4	151	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MASPVAGTPP FLTKTYAMVE DPSTDDTISW NDTGTAFVVW RPAEFARDLL PKHFKHSNFS 60 SFVRQLNTYG FKKVVADRWE FANDCFRRGE KHLLGGIQRR KGTGASAGAA AVPGIPTAIP 120 ISSPPTSSGG EPAVSSSPPR GVAAAAGVSG AVAELEEENA RLRRENASLK RELARARSLC 180 DGVRRLVSRY DHGGEGEDDA EGGGDRGGGG ADXXXXAELE EENARLRREN ASLKRELARA 240 RSLCDGVRRL VSRYDHGGEG EDDAEGGGDR GGGGGGPGGK PILFGVAIGS KRSRGDDGDE 300 EDDGVDGVED DGEDEEEDDD ERHAARGRED KKRRNDQSDL DVLALSVRAA AAAARPGAAG 360 SRSRKSSVS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MASPVAGTPP FLTKTYAMVE DPSTDDTISW NDTGTAFVVW RPAEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVVADRWE FANDCFRRGE KHLLGGIQRR KGTGASAGAA AVPGIPTAIP  120
ISSPPTSSGG EPAVSSSPPR GVAAAAGVSG AVAELEEENA RLRRENASLK RELARARSLC  180
DGVRRLVSRY DHGGEGEDDA EGGGDRGGGG ADXXXXAELE EENARLRREN ASLKRELARA  240
RSLCDGVRRL VSRYDHGGEG EDDAEGGGDR GGGGGGPGGK PILFGVAIGS KRSRGDDGDE  300
EDDGVDGVED DGEDEEEDDD ERHAARGRED KKRRNDQSDL DVLALSVRAA AAAARPGAAG  360
SRSRKSSVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-26	1	100	11	120	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446950.1	1e-119	heat stress transcription factor B-2a
Swissprot	Q7XRX3	1e-117	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	C5YE30	1e-118	C5YE30_SORBI; Uncharacterized protein
STRING	Sb06g025710.1	1e-118	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]