PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01453.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 217aa MW: 24452.9 Da PI: 9.8431

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01453.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.1	1.7e-27	84	134	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt eLH++F++a+e LGG++kAtPk il++m+ +gLt++hvkSHLQk Zmw_sc01453.1.g00090.1.am.mk 84 PRIRWTAELHRSFLQAIECLGGQDKATPKLILRFMGAEGLTISHVKSHLQK 134 9*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.2E-26	80	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-15	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-22	84	134	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-6	87	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MRWLESLDQC IPFVPFHLFT SHASQYAKSC QEEEAGENRK ASVWFFPLAP AAFSSPGCLR 60 VQASEMGSGG RNGAVRRYNR SKEPRIRWTA ELHRSFLQAI ECLGGQDKAT PKLILRFMGA 120 EGLTISHVKS HLQKREVWTV WRRKKRAEMG TEASYKGMQG SQGISEMRTA ANQYYCMHDY 180 MQAMAMEGRI KQEGLRWQRD AAAAAAADVV SSLQTVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	85	134	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	85	134	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652650.1	5e-55	PREDICTED: uncharacterized protein LOC102700890
TrEMBL	J3M0G9	1e-53	J3M0G9_ORYBR; Uncharacterized protein
STRING	OB04G28940.1	2e-54	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83