PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01456.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 201aa MW: 22479.4 Da PI: 6.6107

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01456.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103	4.1e-32	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGf+F P+deelvv++L++k++ +++ ++i+ v +++++Pw+L+ ++ + ++wyfFs++ + +r+t Zmw_sc01456.1.g00100.1.sm.mkhc 7 LPPGFHFFPSDEELVVQFLHRKASLLPCQP-DIIPIVPLNQHDPWELNGRALEAGNQWYFFSNATR--------SRVTP 76 79***********************999.99**********976667789**9866........699 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyW+ d+ v s +g +vglkktLvf + +kg +t+Wvmhey+l Zmw_sc01456.1.g00100.1.sm.mkhc 77 NGYWNPICADEMVSS-GGCNVGLKKTLVFTVRQPSKGIQTNWVMHEYNL 124 ***********99.99********999************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-42	4	163	IPR003441	NAC domain
PROSITE profile	PS51005	37.853	7	165	IPR003441	NAC domain
Pfam	PF02365	5.9E-21	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MVGPSDLPPG FHFFPSDEEL VVQFLHRKAS LLPCQPDIIP IVPLNQHDPW ELNGRALEAG 60 NQWYFFSNAT RSRVTPNGYW NPICADEMVS SGGCNVGLKK TLVFTVRQPS KGIQTNWVMH 120 EYNLLDGSCK GSGSRINSSS KRLHKKKSHP KADCNNWVVC RVFDSSCGSK VSFHEEGTEL 180 SCLDEVFLSL DDYDEVSLTS K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	7	170	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	7	170	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	7	170	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	7	170	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	7	170	20	173	NAC domain-containing protein 19
3swm_B	2e-35	7	170	20	173	NAC domain-containing protein 19
3swm_C	2e-35	7	170	20	173	NAC domain-containing protein 19
3swm_D	2e-35	7	170	20	173	NAC domain-containing protein 19
3swp_A	2e-35	7	170	20	173	NAC domain-containing protein 19
3swp_B	2e-35	7	170	20	173	NAC domain-containing protein 19
3swp_C	2e-35	7	170	20	173	NAC domain-containing protein 19
3swp_D	2e-35	7	170	20	173	NAC domain-containing protein 19
4dul_A	2e-35	7	170	17	170	NAC domain-containing protein 19
4dul_B	2e-35	7	170	17	170	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	148	KKKSH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823281.1	1e-107	NAC domain-containing protein 104-like isoform X1
Swissprot	Q8GWK6	2e-59	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A3L6PXI4	1e-106	A0A3L6PXI4_PANMI; NAC transcription factor 29-like
STRING	Pavir.Ga01785.1.p	1e-105	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]