PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01456.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 233aa    MW: 25429.8 Da    PI: 7.6485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01456.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.8e-07209230326
                                     S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                      e+Cr+f r G+C++ ++C+F H+
  Zmw_sc01456.1.g00170.1.sm.mkhc 209 VEICRDFKR-GECNR-ASCRFYHP 230
                                     589******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.59672100IPR000571Zinc finger, CCCH-type
SMARTSM003560.0267399IPR000571Zinc finger, CCCH-type
PfamPF146082.37897No hitNo description
SMARTSM003560.89103127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216107128IPR000571Zinc finger, CCCH-type
PfamPF146080.21107125No hitNo description
PROSITE profilePS5010312.812174200IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054174199IPR000571Zinc finger, CCCH-type
PfamPF146080.021180198No hitNo description
PROSITE profilePS5010312.99206232IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4206231IPR000571Zinc finger, CCCH-type
PfamPF146080.0029211230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MASAEIPNPA PDVTHPDAAA AAAAAVPADA PVQTDATASA DAPAPAHSSY AHPHQSVTVD  60
RSLLKSIGVE DPKVKMVCRD FARGKCSRSA NECRFLHHSS VEDCAVICQD FLRGRCERKS  120
CRYSHAAAHP MPPMGNIPIQ YSDMLYMPPP PLPPLGVPMM GPPPSPPRAF ADFRNSAEVC  180
RDFLKNMCNR ESCRYLHPDT HTPATSNNVE ICRDFKRGEC NRASCRFYHP YAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020403449.11e-94uncharacterized protein LOC100382535 isoform X4
RefseqXP_023157307.11e-94uncharacterized protein LOC100382535 isoform X4
SwissprotQ0JD077e-79C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A1D6EA693e-93A0A1D6EA69_MAIZE; Zinc finger CCCH domain-containing protein 28
STRINGSb06g017290.25e-88(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]