PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01461.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 457aa MW: 47990.8 Da PI: 4.7511

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01461.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.5	8.6e-32	83	185	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++ Zmw_sc01461.1.g00070.1.sm.mkhc 83 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradagtgdedSGRGRRTRAVTRVGCKAMIR 161 *******************************************************999999************ PP FAR1 68 vkkekdgkwevtkleleHnHelap 91 vkk+++g+w vtkle+ HnH+l p Zmw_sc01461.1.g00070.1.sm.mkhc 162 VKKQDNGRWSVTKLETAHNHPLIP 185 *******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-29	83	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MERDAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG AAPASSASAS VSASAYAART 60 GAYEGVDPFE GMEFADEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSVM SRQFVCAKEG 120 FRTYRGKNEV ARADAGTGDE DSGRGRRTRA VTRVGCKAMI RVKKQDNGRW SVTKLETAHN 180 HPLIPADQSH CLRPHKPLVQ EPKEEQSNSA EDGVHSPTWR YNSLCREALR YAEDGSSSLE 240 SLQEAANRSH ELSQANGNSG SSVNALNSNA AQQLVTVPIG FCPSMDGSNI SAAGMNSSHP 300 GDASSNGKVS SAQQAATHSQ AKAPDSFGSR GNPEGSSIRA AAIAAGARIA SPSDAASIIK 360 AAQSKGAIRI KPGENLPNCL KPLAPKPLTS LPPVNTPNSE HPSPGHAQPG QLRFGDSAAT 420 KDAIFGSSDG SDDEYDDDTT DDDDEDEALT GDDAEHE

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MERDAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG AAPASSASAS VSASAYAART  60
GAYEGVDPFE GMEFADEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSVM SRQFVCAKEG  120
FRTYRGKNEV ARADAGTGDE DSGRGRRTRA VTRVGCKAMI RVKKQDNGRW SVTKLETAHN  180
HPLIPADQSH CLRPHKPLVQ EPKEEQSNSA EDGVHSPTWR YNSLCREALR YAEDGSSSLE  240
SLQEAANRSH ELSQANGNSG SSVNALNSNA AQQLVTVPIG FCPSMDGSNI SAAGMNSSHP  300
GDASSNGKVS SAQQAATHSQ AKAPDSFGSR GNPEGSSIRA AAIAAGARIA SPSDAASIIK  360
AAQSKGAIRI KPGENLPNCL KPLAPKPLTS LPPVNTPNSE HPSPGHAQPG QLRFGDSAAT  420
KDAIFGSSDG SDDEYDDDTT DDDDEDEALT GDDAEHE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559622.3	2e-99	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1GPV5	5e-98	I1GPV5_BRADI; Uncharacterized protein
STRING	BRADI1G13310.1	8e-99	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967