PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01462.1.g00290.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 107aa    MW: 11650.5 Da    PI: 10.1644
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01462.1.g00290.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-284291251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rie+++ rqvtfskRr g+lKKA+ELSvLCdaev +i+fs++g+ly ++s
  Zmw_sc01462.1.g00290.1.am.mk 42 RIEDTTSRQVTFSKRRSGLLKKAFELSVLCDAEVGLIVFSPRGRLYQFAS 91
                                  8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-353392IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.8753393IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283555IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-263591IPR002100Transcription factor, MADS-box
PfamPF003191.4E-264289IPR002100Transcription factor, MADS-box
CDDcd002651.31E-334391No hitNo description
PRINTSPR004041.2E-285570IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-287091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVATAAMAAE AAPSPEGGDQ IVAEAPDGRK KLGRRGRREM RRIEDTTSRQ VTFSKRRSGL  60
LKKAFELSVL CDAEVGLIVF SPRGRLYQFA SAIEYVLPLL PCPSPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-182892159Myocyte-specific enhancer factor 2A
3kov_B3e-182892159Myocyte-specific enhancer factor 2A
3kov_I3e-182892159Myocyte-specific enhancer factor 2A
3kov_J3e-182892159Myocyte-specific enhancer factor 2A
3mu6_A2e-182892159Myocyte-specific enhancer factor 2A
3mu6_B2e-182892159Myocyte-specific enhancer factor 2A
3mu6_C2e-182892159Myocyte-specific enhancer factor 2A
3mu6_D2e-182892159Myocyte-specific enhancer factor 2A
3p57_A3e-182892159Myocyte-specific enhancer factor 2A
3p57_B3e-182892159Myocyte-specific enhancer factor 2A
3p57_C3e-182892159Myocyte-specific enhancer factor 2A
3p57_D3e-182892159Myocyte-specific enhancer factor 2A
3p57_I3e-182892159Myocyte-specific enhancer factor 2A
3p57_J3e-182892159Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020261770.11e-29MADS-box transcription factor 50-like
SwissprotA2Z9Q77e-29MAD56_ORYSI; MADS-box transcription factor 56
SwissprotP0C5B26e-29MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A1E5VTG72e-33A0A1E5VTG7_9POAL; MADS-box protein SOC1
STRINGXP_009375845.12e-28(Pyrus x bretschneideri)
STRINGSi038299m9e-29(Setaria italica)
STRINGTraes_1BL_F1D5BF5F8.21e-28(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Bai Z, et al.
    The impact and origin of copy number variations in the Oryza species.
    BMC Genomics, 2016. 17: p. 261
    [PMID:27025496]
  4. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  5. Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
    Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice.
    Front Plant Sci, 2016. 7: p. 1270
    [PMID:27621738]