PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01486.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 125aa MW: 13287.2 Da PI: 6.232

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01486.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	28.1	4.2e-09	3	50	19	58
SS-EEEEEE-ST...T---EEEEEE-SSSTTE.....EEEEEES--SS CS WRKY 19 efprsYYrCtsa...gCpvkkkversaedpkv.....veitYegeHnh 58 + rsYYrCt + gCp+k+ v+r+++ ++ +++Y H++ Zmw_sc01486.1.g00050.1.am.mk 3 AHCRSYYRCTWSaeqGCPAKRTVQRNDDGDDIggspkYTVVYMAVHTC 50 578*****988889********9654432222367888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	8.662	1	28	IPR003657	WRKY domain
SMART	SM00774	8.7E-6	2	52	IPR003657	WRKY domain
Pfam	PF03106	1.9E-10	3	50	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.4E-9	3	51	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-9	4	51	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MAAHCRSYYR CTWSAEQGCP AKRTVQRNDD GDDIGGSPKY TVVYMAVHTC TANDSMEKPV 60 ILETTAVQAA YKKPCGAKNI ATPAAFLPPP AVESAAAAES SIPILHAVLK IEPDVSLASG 120 EMKCE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977390.1	5e-28	probable WRKY transcription factor 58
TrEMBL	A0A0A9HC42	3e-28	A0A0A9HC42_ARUDO; Uncharacterized protein
STRING	Si010813m	2e-27	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5760	30	58