PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01491.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 154aa MW: 17235 Da PI: 9.3029

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01491.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	1	43	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ Lr+++P+ +K++Ka++ + A+ YI +Lq Zmw_sc01491.1.g00150.1.am.mk 1 MERDRRRRLNEKLYALRSVVPNI-----TKMDKASVIRDAIAYIEKLQ 43 6*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.605	1	42	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-15	1	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-13	1	47	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-14	1	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-12	1	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	1	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MERDRRRRLN EKLYALRSVV PNITKMDKAS VIRDAIAYIE KLQEEERCVL AEISVLESST 60 AVQVLEAWDK MAVQQGPGRR AQGVPLRLRI VTNTVAAVGD TVVHTMFGQV TPNNNYLLLT 120 DIAGAGLAAP FRTLWLHASL SCSCLWDRRM TSIP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823076.1	1e-35	transcription factor bHLH35-like isoform X1
TrEMBL	A0A1E5URI2	8e-35	A0A1E5URI2_9POAL; Transcription factor bHLH35 (Fragment)
TrEMBL	A0A3L6PYE4	1e-34	A0A3L6PYE4_PANMI; Transcription factor bHLH35-like
STRING	Pavir.Gb02374.1.p	5e-33	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133