PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01499.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 518aa MW: 57247.1 Da PI: 7.8632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01499.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	320	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f Lr+l+P +K++ a+iL ++eY+k+L+ Zmw_sc01499.1.g00090.1.am.mk 320 SHVLKERRRREKLNERFVVLRSLVPFV-----TKMDRASILGDTIEYVKQLR 366 79999*******************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.787	316	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-18	319	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	320	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.25E-14	320	370	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-17	320	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-16	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
LPGKAYATRR HVWLSGANQA DSKVFLRAIL AKVEEDIGLV QYARSIFMDQ HGGHIHMVPT 60 LSGHSTSSPI VTHIDDTPLH IKWGRHTAYP NVHPHHNLNP ENKPSEDEDD AARFDTECVS 120 DLEAKNEKGS CWQKNFGSSE QAATPNPGSS GLMHVGVSDG ARYGCSSYVD EDVDGERREE 180 GHGQWDLLYE NLCSGYLEPS AEDQAIPPEN AHYAETVLRI LRHNADRQTA SCVKTHLTVS 240 TSSSFSRWNP KRPAVDLRNV AVSECAPQRM LKSILFINVG SSRCKFREAP TSPPEARDVD 300 GEGTSRTRRG QQGQAELSAS HVLKERRRRE KLNERFVVLR SLVPFVTKMD RASILGDTIE 360 YVKQLRRRIQ DLESRPRLMT DTAPRPPPAT SSHETRGYST RAGTWTTRAA AAEPASDVIS 420 CSTSSLAAAE VQVSIIESDA LVEVRCPHRD GLLLRVLQAV HRDLRMEVTS VQASSAGGAL 480 IAELRAKASM RTVKEVHGRR SSIAEVKRSI HLILSSSD

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

LPGKAYATRR HVWLSGANQA DSKVFLRAIL AKVEEDIGLV QYARSIFMDQ HGGHIHMVPT  60
LSGHSTSSPI VTHIDDTPLH IKWGRHTAYP NVHPHHNLNP ENKPSEDEDD AARFDTECVS  120
DLEAKNEKGS CWQKNFGSSE QAATPNPGSS GLMHVGVSDG ARYGCSSYVD EDVDGERREE  180
GHGQWDLLYE NLCSGYLEPS AEDQAIPPEN AHYAETVLRI LRHNADRQTA SCVKTHLTVS  240
TSSSFSRWNP KRPAVDLRNV AVSECAPQRM LKSILFINVG SSRCKFREAP TSPPEARDVD  300
GEGTSRTRRG QQGQAELSAS HVLKERRRRE KLNERFVVLR SLVPFVTKMD RASILGDTIE  360
YVKQLRRRIQ DLESRPRLMT DTAPRPPPAT SSHETRGYST RAGTWTTRAA AAEPASDVIS  420
CSTSSLAAAE VQVSIIESDA LVEVRCPHRD GLLLRVLQAV HRDLRMEVTS VQASSAGGAL  480
IAELRAKASM RTVKEVHGRR SSIAEVKRSI HLILSSSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	329	ERRRRE
2	325	330	RRRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679989.1	1e-159	transcription factor TT8
TrEMBL	A0A1E5VN50	1e-158	A0A1E5VN50_9POAL; Basic helix-loop-helix protein A
TrEMBL	K3ZR76	1e-158	K3ZR76_SETIT; Uncharacterized protein
STRING	Si029106m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8863	30	36