PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01504.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 497aa    MW: 53610.5 Da    PI: 7.8412
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01504.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06247269426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   ++C+ f+    C++Gd C FaHg
  Zmw_sc01504.1.g00110.1.sm.mk 247 VPCDSFRLADGCPRGDACDFAHG 269
                                   79999***99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.7E-1659142IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.58E-1459141IPR020683Ankyrin repeat-containing domain
PfamPF127963.0E-860130IPR020683Ankyrin repeat-containing domain
SMARTSM002489.26292IPR002110Ankyrin repeat
PROSITE profilePS5029716.20262137IPR020683Ankyrin repeat-containing domain
CDDcd002042.17E-1364140No hitNo description
PROSITE profilePS5008812.50297132IPR002110Ankyrin repeat
SMARTSM002480.001197129IPR002110Ankyrin repeat
PROSITE profilePS5010311.76243271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6243270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.75E-5243272IPR000571Zinc finger, CCCH-type
SMARTSM003560.021243270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5275306IPR000571Zinc finger, CCCH-type
SMARTSM0035620279302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVDGHADHAR GAGRRERLAS LLDLAAADDV AGFRAALDAA GSEAAELVDE VELWYGRSKA  60
YEPRTPLMVA ATCGSAAVVT LLLGLGCVDV NRRPGVDGAT ALHCAASGGS PNAVAVVRLL  120
LAAGADPAIP DSAGRVPADV VHAHPASPDT LAGLEALLGR RRELSPVSAL VYTTTTNGGG  180
NKKAYPVDPT LPDMSSSVYA SDEFRMFAFK VQPCARAYAH EWAECPFVHP GENARRRDPR  240
RHAYTAVPCD SFRLADGCPR GDACDFAHGV FESWLHPSRY RTRLCRDGAA CSRRICFFAH  300
AEHELRYVSR DGASTALLSP RTMDDMATAA TLGLQFPRSP TGGHFLQQGS KRYAAFDACL  360
EEQVDELSAL FDFASLSRSQ PRLASIRRPS AAPPLTYMAL PPSRFGNDHG ASVYTPQPAQ  420
TSQLLARIRQ QQGVRLPPVK QREMFERPFS CPTLKHHHLR SPPVTARGYS DASWINAGCP  480
GSKVDWSFNA EELLRSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.11e-167PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.11e-167PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL21e-165C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0E0ED941e-166A0A0E0ED94_9ORYZ; Uncharacterized protein
STRINGOB07G24910.11e-167(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]