PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01522.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 349aa    MW: 38641.6 Da    PI: 10.3213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01522.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016271293123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cg  Fs    L  H+r+H
  Zmw_sc01522.1.g00190.1.am.mk 271 HECAVCGLEFSMGQALGGHMRRH 293
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-5220247No hitNo description
PfamPF139121.0E-10222245IPR007087Zinc finger, C2H2
SMARTSM003550.32223245IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159223250IPR007087Zinc finger, C2H2
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4269298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.95E-6269298No hitNo description
PfamPF139121.0E-10270295IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.217271298IPR007087Zinc finger, C2H2
SMARTSM003550.89271293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTCGLCYMDP IHVKPVDPHG APKRCRLPHR TSRRLRVAWL PRRIIRASHV MSAAVRPSGR  60
RVDSRAPPPT WSTRPPHTFE RAVRPGNKQV GVPAQQQHRL PMRHTPRTGD DWLTEPTSLI  120
GKRLAWPARS HANTSTPDVD DSSIHHTHPR EPHTSQWLAR ASGLARFINH HAARVPAPAR  180
EAEESKEMEE GLKTHADALL SLSLSSSTTT TSSRKAMAAE GVFECKTCRK RFPSFQALGG  240
HRTSHTRLQA RMLSDPPAAT AAERDARART HECAVCGLEF SMGQALGGHM RRHRGEAPPA  300
VLAQQEEETM PDLNFPPLEN DDGGDGRTGQ DQEPSSGDQQ QPQLLNLLL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157