PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01541.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 229aa MW: 25177.2 Da PI: 4.9808

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01541.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	12	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+++W+++++ Rt++++k++w+++l Zmw_sc01541.1.g00010.1.sm.mk 12 KGPWTPEEDIVLVSYIQQHGPRNWRAVPENTAiasylPQRTDNDIKNYWNTHL 64 79******************9987555444444444**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.374	7	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-22	8	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.9E-16	9	71	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-12	11	66	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-14	12	64	IPR001005	SANT/Myb domain
CDD	cd00167	3.64E-14	14	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGRPPCCENV KKGPWTPEED IVLVSYIQQH GPRNWRAVPE NTAIASYLPQ RTDNDIKNYW 60 NTHLKKKVKR LQTQPADSIQ TTPSNALSSL NYYSSGSTQH DFQGMQSLNN YPSTASIGSE 120 TTATTVSDLV QKWKMRPSPA LTVANYKIAM QEFQEDQAAA AVVCNDGHFV FNDDRSSSSS 180 GTMAPVMMGC SSTATFSLLE DWLLDDMQGQ AMDGIVGISG CCCADPIMF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979484.1	5e-94	transcription factor MYB30
Swissprot	B3VTV7	4e-34	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A1E5V910	2e-94	A0A1E5V910_9POAL; Myb-related protein 306
STRING	Si026733m	2e-93	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]