PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01551.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 264aa    MW: 29755.2 Da    PI: 8.6001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01551.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.57.4e-3036125187
                                   EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                   f+k ltpsdv+k++rlv+pk++ae++   +g+ e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD
  Zmw_sc01551.1.g00110.1.sm.mk  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplSGSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGD 116
                                   99***************************555567889******************************************* PP

                                   EEEEEE-SS CS
                            B3  79 fvvFkldgr 87 
                                   +v F++++ 
  Zmw_sc01551.1.g00110.1.sm.mk 117 VVHFERMRG 125
                                   *****7754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-3930147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2933139IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-2935125No hitNo description
SMARTSM010193.4E-2336140IPR003340B3 DNA binding domain
PfamPF023622.9E-2736138IPR003340B3 DNA binding domain
PROSITE profilePS5086313.74736139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAMNHISQEH PQVWPWGVAM YTNLHYHHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLSGSGEK GLILSFEDEA GKPWRFRYSY WTSSQSYVLT KGWSRYVKEK HLDAGDVVHF  120
ERMRGLGIGD RLFIGFRRRG ESATTRAVAP PLPAVRVAAA AQSAGEQQPW SPMCYSTSGS  180
YPNSPANSYA YRHSVDHDRS NTPHAGESSA ASVPSRRLRL FGVNLDCGPE PEAETPTAMY  240
GSYMQQSPTF PEPSTWSALQ NQSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-50311393113B3 domain-containing transcription factor NGA1
5os9_B2e-50311393113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827829.11e-146B3 domain-containing protein Os11g0156000-like isoform X1
SwissprotQ53QI01e-116Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A3L6PJV11e-144A0A3L6PJV1_PANMI; Uncharacterized protein
STRINGSb05g003450.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]