PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01555.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

AP2

Protein Properties

Length: 243aa MW: 25762.7 Da PI: 6.4062

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01555.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.4	2.7e-11	89	145	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d s+ g krk + g++ t+e+Aaka++ a++k++g Zmw_sc01555.1.g00080.1.sm.mkhc 89 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 145 789****************55558777778888.999999***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	6.21E-11	89	156	IPR016177	DNA-binding domain
Pfam	PF00847	7.4E-8	89	145	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.0E-9	90	156	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-12	90	161	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.158	90	155	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-5	91	102	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	9.506	142	210	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-4	170	216	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.95E-6	172	212	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.9E-7	184	210	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-5	192	212	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MATVHPQSSS PGPTAAPPPP PPHPPAASVD PAAQADGGGE IAALDKQLAV VVGGGGGAER 60 KSGPGAGGGG GGGKLVAEAM RKYAAPRSSR FHGVTRLKWS GKYEAHLWDN TSQVEGRKRK 120 GKHGSYVTEE QAAKAHDLAA LKYWGIGPNT KLNFNVSDYE KEIDIMKAMS QDEFVAYIRR 180 RKDETEEEAA EAYDIAAIQL RGVHAVTNFD ISNYCENDLT KIEDPSEVAK LEGPSEAMKL 240 AGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977550.1	1e-114	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q84Z02	3e-41	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A3L6RDA8	1e-113	A0A3L6RDA8_PANMI; AP2-like ethylene-responsive transcription factor AIL1
STRING	Si010747m	1e-113	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]