PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01566.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 327aa MW: 34575.6 Da PI: 9.7549

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01566.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	4.1e-09	264	301	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ri +++ +L+el+P+ k + a++L +Av+YIk+Lq Zmw_sc01566.1.g00110.1.am.mk 264 TRISERIRKLQELVPSM----EKQTNTADMLDLAVDYIKDLQ 301 69************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.884	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-6	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	264	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-13	265	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-11	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-8	265	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MYGSTVSKDL NLPAVQPQPA TGARTPPPQM SSSGLLRYRS APSNLLGEVC VEDFHAAEGG 60 AAGHPRPDHA ADAALARLLR QSSSPAGFLN HLHMDNGYGN MLRAGGFRNG GDARVKGQLS 120 YSSRQGSVMS QISEMGSEEL GGSSPEAGSN GATAARSYSG IPATGYNAMD ATDQSHLSGA 180 KRPRGPASDP AHALPAQNGH HLVPQLSLPS GGGGYGGDRE VLAVPGRRPL QDPRQARLRH 240 APPQHRRAGT PSLPPSPAAL TRPTRISERI RKLQELVPSM EKQTNTADML DLAVDYIKDL 300 QKQVKELNDS RANCTCSASK RQNQFTC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803424.1	3e-81	transcription factor bHLH130-like
Refseq	XP_025803426.1	3e-81	transcription factor bHLH130-like
TrEMBL	A0A0A9VBR8	2e-82	A0A0A9VBR8_ARUDO; Uncharacterized protein
STRING	TRIUR3_26625-P1	4e-74	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103